Publications and Patents



  1. Jain. A., Spann, A.,Cochrane, A., Schunk, P. R., Bonnecaze, R. T. 2017 Fluid flow in UV nanoimprint lithography with patterned templatesMicroelectronic Engineering, 173, 62-70.

  2. Khabaz, F., Liu, T., Cloitre, M., Bonnecaze, R. T. 2017 Shear-induced ordering and crystallization of jammed suspensions of soft particles glasses, Phys. Rev. Fluids 2, 093301.
  3. Jain, S., Na, S. R., Liechti, K. M., Bonnecaze, R.T. 2017 A cohesive zone model and scaling analysis for mixed-mode interfacial fracture, International Journal of Solids and Structures,


  1. Cherala, A., Chopra, M., Yin, B., et al. 2016 Nanoshape Imprint Lithography for Fabrication of Nanowire Ultracapacitors, IEEE Transactions on Nanotechnology 15 (3), 448-456.
  2. Chopra, M., Zhang, Z., Ekerdt, J., Bonnecaze, R. T. 2016 Rapid recipe formulation for plasma etching of new materials, SPIE Advanced Lithography, 978111-978111-6.
  3. Ferraro, M. E., Truskett, T. M., Bonnecaze, R. T. 2016 Graphoepitaxy for translational and orientational ordering of monolayers of rectangular nanoparticles, Physical Review E 93 (3), 032606.
  4. Jain, S., Na, S. R., Liechti, K. M., Bonnecaze, R.T. 2016 Characteristic scaling equations for softening interactions between beams, International Journal of Fracture 201, 1-9.
  5. Jain, A., Spann, A., Bonnecaze, R. T. 2016

    Effect of droplet size, droplet placement, and gas dissolution on throughput and defect rate in UV nanoimprint lithography, Journal of Vacuum Science & Technology B, Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena 35, 011602.


  1. Chopra, M., Bonnecaze, R. T. 2015 Impact of polymer curing on two-dimensional and three-dimensional shape change in nanoimprint lithography, Journal of Micro/Nanolithography, MEMS, and MOEMS 14 (4), 044502-044502.
  2. Huang, R., Silva, J., Huntington, B. A., et al. 2015 Co-Extrusion Layer Multiplication of Rheologically Mismatched Polymers: A Novel Processing Route, International Polymer Processing 30 (3), 317-330.
  3. Chopra, M., Bonnecaze, R. T. 2015 Shape change of cured 2D and 3D nanostructures from imprint lithography, SPIE Advanced Lithography, 94230W-94230W-6.
  4. Mohan, L., Cloitre, M., Bonnecaze, R. T. 2015 Build-up and two-step relaxation of internal stress in jammed suspensions, Journal of Rheology (1978-present) 59 (1), 63-84.


  1. Mohan, L., Cloitre, M., Bonnecaze, R. T. 2014 Active microrheology of soft particle glasses, Journal of Rheology 58 (5), 1465-1482.
  2. Ferraro, M. E., Bonnecaze, R. T., Truskett, T. M.  2014 Graphoepitaxy for pattern multiplication of nanoparticle monolayers, Physical review letters 113 (8), 085503.
  3. Wessel, A. K., Arshad, T. A., Fitzpatrick, M., et al. 2014 Oxygen limitation within a bacterial aggregate, MBio 5 (2), e00992-14.
  4. Harris, P. J., Patz, J., Huntington, B.A., Bonnecaze, R. T., et al. 2014 Improved interfacial surface generator for the co‐extrusion of micro‐and nanolayered polymers, Polymer Engineering & Science 54 (3), 636-645.
  5. Metin, C. O., Bonnecaze, R. T., Lake, L. W., et al. 2014 Aggregation kinetics and shear rheology of aqueous silica suspensions, Applied Nanoscience 4 (2), 169-178.
  6. Hale, H. S., Bonnecaze, R. T., Hidrovo, C. H. 2014 Optimization of capillary flow through square micropillar arrays, International Journal of Multiphase Flow 58, 39-51.
  7. Chauhan, S., Somervell, M., Carcasi, M., et al. 2014 Mesoscale modeling: a study of particle generation and line-edge roughness, Journal of Micro/Nanolithography, MEMS, and MOEMS 13 (1), 013012-013012.
  8. Arshad, T. A., Kim, C. B., Prisco, N. A., et al. 2014 Precision Marangoni-driven patterning, Soft matter 10 (40), 8043-8050.


  1. Mohan, L., Bonnecaze, R. T., Cloitre, M. 2013 Microscopic origin of internal stresses in jammed soft particle suspensions, Physical review letters 111 (26), 268301.
  2. Clements, M., Bonnecaze, R. T. 2013 Diffusion Limited Delivery of Streptokinase and tPA to a Thrombus, Cardiovascular Engineering and Technology 4 (4), 364-373.
  3. Dunia, R., Bonnecaze, R. T. 2013 Mathematical modeling of viral infection dynamics in spherical organs, Journal of mathematical biology 67 (6-7), 1425-1455.
  4. Singhal, S., Meissl, M. J., Bonnecaze, R. T., Sreenivasan, S. V. 2013 Inkjet-based deposition of polymer thin films enabled by a lubrication model incorporating nano-scale parasitics, Physics of Fluids 25 (9), 092002.
  5. Metin, C., Bonnecaze, R. T., Nguyen, Q. 2013 The viscosity of silica nanoparticle dispersions in permeable media, SPE Reservoir Evaluation & Engineering 16 (03), 327-332.
  6. Huntington, B. A., Chabert, E., Rahal, S., Patz, J., et al. 2013 Distortion of Interfaces in a Multilayer Polymer Co-extrusion Feedblock, International Polymer Processing 28 (3), 274-280.
  7. Jain, A., Bonnecaze, R. T. 2013 Fluid management in roll-to-roll nanoimprint lithography, Journal of Applied Physics 113 (23), 234511.
  8. Katira, P., Bonnecaze, R.T., Zaman, M. H. 2013 Modeling the mechanics of cancer: effect of changes in cellular and extra-cellular mechanical properties, Frontiers in oncology 3, 145.
  9. Mohan, L., Pellet, C., Cloitre, M., Bonnecaze, R. T. 2013 Local mobility and microstructure in periodically sheared soft particle glasses and their connection to macroscopic rheology, Journal of Rheology 57 (3), 1023-1046.
  10. Metin, C.O., Bonnecaze, R.T., Lake, L.W., Miranda, C.R. & Nguyen. Q.P. 2013 Aggregation kinetics and shear rheology of aqueous silica suspensions, Applied Nanoscience DOI 10.1007/s13204-012-0185-6.


  1. Arshad, T. A. & Bonnecaze, R.T. 2012 Templated evaporative lithography for high throughput fabrication of nanopatterned films, Nanoscale 5, 624-633.
  2. Tung, K.K., Bonnecaze, R.T., Freeman, B.D. & Paul, D.R. 2012 Characterization of the oxygen scavenging capacity and kinetics of SBS films, Polymer 53, 4211-4221.
  3. Afsharpoor, A., Balhoff, M.T., Bonnecaze, R.T., & Huh, C. 2012 CFD modeling of the effect of polymer elasticity on residual oil saturation at the pore-scale, J. Pet. Sci. & Eng. Sci. 94-95, 79-88.
  4. Carranza, S., Paul, D.R. & Bonnecaze, R.T. 2012 Multilayer reactive barrier materials, J. Membrane Sci. 399-400, 73-85.
  5. Mohan, L. & Bonnecaze, R.T. 2012 Short ranged radial distribution function for soft particle glasses, Soft Matter 8, 4216-4222.
  6. Katira, P., Zaman, M. & Bonnecaze, R.T. 2012 How changes in cell mechanical properties induce cancerous behavior, Phys. Rev. Lett. 108(2), 028103.
  7. Seth, J.R., Locatelli-Champagne, C., Monti, F., Bonnecaze, R.T. & Cloitre, M. 2012 How do soft particle glasses yield and flow near solid surfaces? Soft Matter 8, 140-148.


  1. Seth, J.R., Mohan, L., Locatelli, C., Cloitre, M. & Bonnecaze, R.T. 2011  A micromechanical model to predict the flow of soft particle glasses, Nature Materials 10, 838-843.
  2. Baker, E.L., Srivastava, J., Yu, D.H., Bonnecaze, R.T., & Zaman, M.H. 2011 Cancer cell migration: integrated roles of matrix mechanics and transforming potential, PLOS ONE 6(5), e20355.
  3. Metin, C.O., Bonnecaze, R.T. & Nguyen, Q.P. 2011 Shear Rheology of Silica Nanoparticle Dispersions, Appl. Rheol. 21, 13146.


  1. Carranza, S., Paul, D.R. & Bonnecaze, R.T. 2010 Analytic design formulae for the design of reactive polymer blend barrier materials, J. Membrane Sci.  360, 1-8.
  2.  Carranza, S., Paul, D.R. & Bonnecaze, R.T. 2010 Design formulae for reactive barrier membranes, (625 KB) Chem. Eng. Sci.65, 1151–1158.


  1. Chauhan, S., Palmieri, F., Bonnecaze, R.T. & Willson, C.G. 2009 Pinning at template feature edges for step and flash imprint lithography, (828 KB) J. App. Phys.106, 034902.
  2. Chauhan, S., Palmieri, F., Bonnecaze, R.T. & Willson, C.G. 2009 Feature filling modeling for step and flash imprint lithography, (671 KB) J. Vac. Sci. Technol. B27(4), 1926-1932.
  3. Ferrari, M.C., Carranza, C., Bonnecaze, R.T., Tung, K.K., Freeman, B.D. & Paul, D.R. 2009 Modeling of oxygen scavenging for improved barrier behavior: Blend films, (1,202 KB) J. Membr. Sci.329, 183-192.


  1. Seth, J.R., Cloitre, M. & Bonnecaze, R.T. 2008 Influence of short-range forces on wall-slip in microgel pastes, (499 KB) J. Rheol.52(5), 1241-1268.
  2. Dickey, M.D., Raines, A., Collister, E., Bonnecaze, R.T., Sreenivasan, S.V., & Willson, C.G. 2008 High-aspect ratio polymeric pillar arrays formed via electrohydrodynamic patterning,(199 KB) J. Mater. Sci.43(1), 117-122.
  3. Norman, J.T., Oguntade. B.O. & Bonnecaze, R.T. 2008 Particle distribution in pressure-driven flows of bimodal, buoyant suspensions, (839 KB) J. Fluid Mech.594, 1-28.


  1. Rabideau, B.D. & Bonnecaze, R.T. 2007 A computational study of the hydrodynamically-assisted organization of DNA-functionalized colloids in 2D, (638 KB) Langmuir23(20), 10000-10007.
  2. Nam, B. & Bonnecaze, R.T. 2007 Analytic models of the infinite porous rotating disk electrode (228 KB) J. Electrochem. Soc.154(10), F191-F197.
  3. Mano. N., Nam, B., Heller, A. & Bonnecaze, R.T. 2007 On the behavior of the porous rotating disc electrode, (511 KB) J. Electrochem. Soc.154(2), F44-F47.
  4. Rabideau, B.D., Pell, L.E., Bonnecaze, R.T. & Korgel, B.A. 2007 Observation of Long Range Orientational Order in Monolayers of Polydisperse Colloids: The “Reverse Brazil Nut Effect” in 2D, (417 KB) Langmuir23(3), 1270-1274.


  1. Bassett, D.W. & Bonnecaze, R.T. 2006 Immersion lithography for laser mask writing, (1,108 KB) J. Vac. Soc. Tech. B24(6), 2659-2667.
  2. Woods, H.A. & Bonnecaze, R.T. 2006 Insect eggs at a transition between diffusion and reaction limitation: temperature, oxygen, and water, (204 KB) J. Theor. Biol.243(4), 483-492.
  3. Seth, R., Cloitre, M. & Bonnecaze, R.T. 2006 Elastic Properties of Soft Pastes: Effect of Microstructure, (235 KB) J. Rheology50, 353-376.
  4. Dickey, M.D., Collister, E., Raines, A., Tsiartis, P., Holcombe, T., Sreenivasan, S.V., Bonnecaze, R.T. & Willson, C.G. 2006 Photocurable pillar arrays formed via electrohydrodynamic instabilities, (609 KB) Chem. Mater.18, 2043-2049.
  5. Ryoo, W., Webber, S.E., Bonnecaze, R.T. and Johnston, K.P. 2006 Long-ranged electrostatic repulsion and crystallization of emulsion droplets in an ultralow dielectric medium supercritical carbon dioxide, (603 KB) Langmuir22(3), 1006-1015.


  1. Rabideau, B.D. & Bonnecaze, R.T. 2005  Computational predictions of stable 2D arrays of bidisperse particles, (256 KB) Langmuir21(23), 10856-10861.
  2. Reddy, S., Schunk, P.R. & Bonnecaze, R.T. 2005  Dynamics of low capillary number interfaces through sharp features, (120 KB) Phys. Fluids17, 122104.
  3. Reddy, S. & Bonnecaze, R.T. 2005 Simulation of fluid flow in the Step and Flash Imprint Lithography process, (354 KB) Microelectronics Engineering82, 60-70.
  4. Ryoo, W., Dickson, J.L., Dhanuka, V.V., Webber, S.E., Bonnecaze, R.T. & Johnston, K.P. 2005 Electrostatic stabilization of colloids in carbon dioxide: electrophoresis and dielectrophoresis,(485 KB) Langmuir21 5914-5923.
  5. Woods, H.A., Bonnecaze, R.T., & Zrubek, B. 2005  Oxygen and water flux across eggs of Manduca Sexta, (345 KB) J. Exp. Biol.208, 1297-1308.
  6. Norman, J.T. & Bonnecaze, R.T. 2005 Quantitative measurement of solids distribution in suspension flows using electrical resistance tomography, Can. J. Chem. Eng.83, 24-36
  7. Norman, J.T., Nayak, H.V. & Bonnecaze, R.T. 2005 Migration of buoyant particles in low Reynolds number pressure-driven flows, (796 KB) J. Fluid Mech.523, 1-35.


  1. Meeker, S., Bonnecaze, R.T. & Cloitre, M. 2004 Slip and flow in pastes of soft particles: Direct observation and rheology, (388 KB) J. Rheology48, 1295-1320.
  2. Rabideau, B.D. & Bonnecaze, R.T. 2004  A computational study of the self-organization of bidisperse nanoparticles, (405 KB) Langmuir20, 9408-9414.
  3. Colburn, M., Choi, B.J., Sreenivasan, S.V., Bonnecaze, R.T. & Willson, C.G. 2004 Ramifications of lubrication theory on imprint lithography, (291 KB) Microelectronics Engineering75, 321-329.
  4. Meeker, S., Bonnecaze, R.T. & Cloitre, M. 2004 Slip and flow in soft particles pastes, (111 KB) Phys. Rev. Lett.92, 198302.
  5. Srivatsan, L., Lake, L.W. & Bonnecaze, R.T. 2004 Scaling analysis of deposition from turbidity currents, (519 KB) Geo-Marine Letters24, 63-74.


  1. Martula, D.S., Lloyd, D.R., & Bonnecaze, R.T. 2003 The effects of viscosity on coalescence-induced coalescence, (174 KB) Int. J. Multiphase Flow29(8), 1265-1282.
  2. Doty, R.C., Bonnecaze, R.T. & Korgel, B.A. 2002 Kinetic bottleneck to the self-organization of bidisperse hard disk monolayers formed by random sequential adsorption (299 KB) Phys. Rev. E.65, 061503.
  3. Gray, J.J. & Bonnecaze, R.T. 2001 Adsorption of charge-bidisperse mixtures of colloidal particles (330 KB) Langmuir17(25), 7935-7947.
  4. Gray, J.J., Klein, D.H., Korgel, B.A., & Bonnecaze, R.T. 2001 Microstructure formation and kinetics in the random sequential adsorption of polydisperse tethered nanoparticles modeled as hard disks (416 KB) Langmuir, 17, 2317-2328.
  5. Gray, J.J. & Bonnecaze, R.T. 2001 Adsorption of colloidal particles by Brownian dynamics simulation: Kinetics and surface structures (697 KB) J. Chem. Phys.114, 1366-1381.
  6. Engblom, W.A., Lake, L.W., & Bonnecaze, R.T. 2001 A front-capture scheme for the simulation of homogenous and particle-laden gravity currents (333 KB) Int. J. Num. Meth. Fluids35, 961-982.
  7. Gray, J.J., Klein, D.H., Bonnecaze, R.T., & Korgel, B.A. 2000 Nonequilibrium phase behavior during the random sequential adsorption of tethered hard disks (399 KB) Phys. Rev. Lett.85, 4430-4433.
  8. Martula, D.S., Hasegawa, T., Lloyd, D.R., & Bonnecaze, R.T. 2000 Coalescence-induced coalescence of inviscid droplets in a viscous fluid (324 KB) J. Coll. Interface Sci.232, 241-253.
  9. Gray, J.J., Chiang, B., & Bonnecaze, R.T. 1999 Colloidal particles: Origin of anomalous multibody interactions (713 KB) Nature402, 750 Brief Communication.
  10. Butler, J.E. & Bonnecaze, R.T. 1999 Inverse method for imaging a free surface using electrical impedance tomography (323 KB) Chem. Eng. Sci.55(7), 1193-1204.
  11. Freeland, A.C. & Bonnecaze, R.T. 1999 Inference of blood glucose concentrations from subcutaneous glucose concentrations: Applications to glucose biosensors (172 KB) Annals of Biomedical Eng.27, 525-537.
  12. Etuke, E.O., Butler, J.E., & Bonnecaze, R.T. 1999 Adapting electrical impedance tomography for imaging forming jets in paper production, Proceedings (refereed) TAPPI 1999 Engineering/Process & Product Quality Conference.
  13. Butler, J.E., Majors, P.D., & Bonnecaze, R.T. 1999 Observations of shear-induced particle migration for oscillatory flow of a suspension within a tube(311 KB) Physics of Fluids11(10), 2865-2877.
  14. Butler, J.E. & Bonnecaze, R.T. 1999 Imaging of particle shear migration with electrical impedance tomography (239 KB) Physics of Fluids11(8), 1982-1994.
  15. Lukner, R.B. & Bonnecaze, R.T. 1999 Piston-driven flow of highly concentrated suspensions(316 KB) J. Rheology43, 735-751.
  16. Bonnecaze, R.T. & Lister, J.R. 1999 Particle-driven gravity currents down planar slopes (.99 MB) J. Fluid Mech.390, 75-91.
  17. Schleizer, A.D. & Bonnecaze, R.T. 1999 Displacement of a two-dimensional immiscible droplet adhering to a wall in shear and pressure-driven flows (835 KB) J. Fluid Mech.383, 29-54.
  18. Etuke, E.O. & Bonnecaze, R.T. 1998 Measurement of angular velocities using electrical impedance tomography (2.30 MB) Flow Meas. & Instr.9, 159-169.
  19. Gray, J.J. & Bonnecaze, R.T. 1998 Rheology and dynamics of sheared arrays of colloidal particles (413 KB) J. Rheology42, 1121-1151.
  20. Schmidtke, D.W., Freeland, A.C., Heller, A., & Bonnecaze, R.T. 1998 Measurement and modeling of the transient difference between blood and subcutaneous glucose concentrations in the rat after injection of insulin (1.10 MB), Proc. Nat. Acad. Sci.95, 294-299.
  21. Tsiartas, P.C., Flanagin, L.W., Henderson, C.L., Hinsberg, W.D., Sanchez, I.C., Bonnecaze, R.T., & Willson, C.G. 1997 The mechanism of phenolic polymer dissolution: A new perspective(307 KB) Macromolecules30, 4656-4664.
  22. Bonnecaze, R.T., Huppert, H.E., & Lister, J.R. 1996 Patterns of sedimentation from polydispersed turbidity currents (1.76 MB) Proc. Roy. Soc. A, 452, 2247-2261.
  23. Bonnecaze, R.T. 1996 Interparticle forces and properties of suspensions, Encyclopedia of Chemical Processing and Design56, 49-68, Marcel Dekker, Inc., New York.
  24. Bonnecaze, R.T., Hallworth, M.A., Huppert, H.E., & Lister, J.R. 1995 Axisymmetric particle-driven gravity currents, J. Fluid Mech.294, 93-121.
  25. Bonnecaze, R.T., Huppert, H.E., & Lister, J.R. 1993 Particle-driven gravity currents, J. Fluid Mech.250, 339-369.
  26. Sparks, R.S.J, Bonnecaze, R.T., Huppert, H.E., Lister, J.R., Hallworth, M.A., Mader, H. & Phillips, J. 1993 Sediment-laden gravity currents with reversing buoyancy, Earth Plan. Sci. Letters114, 243-257.
  27. Bonnecaze, R.T. & Brady, J.F. 1992 Dynamic simulation of an electrorheological fluid (2.55 MB) J. Chem. Phys.90, 2183-2202.
  28. Bonnecaze, R.T. & Brady, J.F. 1992 Yield stresses in electrorheological fluids (2.18 MB) J. Rheology36, 73-115.
  29. Bonnecaze, R.T. & Brady, J.F. 1991 Rate of diffusion-limited reactions in dispersions of spherical traps via multipole scattering (599 KB) J. Chem. Phys.94, 537-540.
  30. Bonnecaze, R.T. & Brady, J.F. 1991 The effective conductivity of random suspensions of spherical particles (2.59 MB) Proc. Roy. Soc. A, 432, 445-465.
  31. Bonnecaze, R.T. & Brady, J.F. 1990 A method for determining the effective conductivity of dispersions of particles (3.31 MB) Proc. Roy. Soc. A, 430, 285-313.

Book Chapters

  1. Bonnecaze, R.T. & Cloitre, M. 2010 Micromechanics of Soft Particle Glasses, Adv. Polym. Sci. doi:10.1007/12.2010.90.
  2. Bonnecaze, RT. 1996 Interparticle forces and properties of suspensions, Encyclopedia of Chemical Processing and Design, 56, 49-68, Marcel Dekker, Inc., New York.


  1. Method for fabricating nanoscale patterns in light curable compositions using an electric field, Patent No. 6,964,793, Date of Patent, November 15, 2005, with C. Grant Willson and S.V. Sreenivasan.
  2. Method for imprint lithography using an electric field, Patent No. 6,908,861, Date of Patent, June 21, 2005, with C. Grant Willson and S.V. Sreenivasan.
  3. Blood analyte monitoring through subcutaneous measurement, Patent No. 6,579,690, Date of Patent, June 17, 2003, with Angela Freeland.
  4. Downhole in-situ measurement of physical and / or chemical properties including fluid saturations of cores while coring, Patent No. 6,220,620, Date of Patent, April 24, 2001, with Mukul Sharma & Bernard Zemel.
  5. Apparatus for photocatalytic fluid purification, Patent No. 6,063,343, Date of Patent, May 16, 2000, with James Say, Adam Heller, Steven Sitkiewitz, Ephraim Heller, Paul Haugsjaa.
  6. Downhole in-situ measurement of physical and / or chemical properties including fluid saturations of cores while coring, Patent No. 6,003,620, Date of Patent, Dec 21, 1999, with Mukul Sharma & Bernard Zemel.
  7. Downhole in-situ measurement of physical and / or chemical properties including fluid saturations of cores while coring, Patent No. 5,984,023, Date of Patent, Nov 16, 1999, with Mukul Sharma & Bernard Zemel.
  8. Apparatus for photocatalytic fluid purification, Patent No.5, 790,934, Date of Patent, Aug 4, 1998, with James Say, Adam Heller, Steven Sitkiewitz, Ephraim Heller, Paul Haugsjaa.