Seeing is believing: dynamic evolution of gene families

Educated by his deep appreciation of nature, Darwin observed that “from so simple a beginning endless forms most beautiful” have arisen throughout the evolutionary history of life on earth (1). The spectacular diversity of orchids (2) and beetles (3) has long fascinated naturalists and casual observers alike. More recently, the adaptive radiations of Hawaiian drosophilids (4), Caribbean Anolis lizards (5), and African cichlid fishes (6) have become prime examples for understanding the mechanisms that enable diversification. Gene duplication and deletion are generally considered important evolutionary mechanisms that give rise to phenotypic diversity (7). Following gene duplication and loss, adaptation and speciation appear to proceed through a combination of both structural and cis-regulatory changes in one or more paralogous genes (8). Recent advances in sequencing technology have enabled researchers to make significant progress in understanding the molecular evolution that has facilitated diversification. In PNAS, Cortesi et al. (9) examine the evolution of vertebrate opsin genes as a spectacular example of how gene duplication and deletion events that affect spectral sensitivity have driven adaptation to diverse light environments and visual displays.