October 8, 2024, Filed Under: Postdoc PositionsGraduate Student and Postdoc Positions Positions are available for motivated scientists to test gene expression and epigenetic changes in plant hybrids and polyploids with a research focus on elucidating molecular mechanisms for hybrid vigor and seed development in Arabidopsis and maize, fiber cell development in cotton, and enhanced stress responses in polyploid plant (Arabidopsis) and crops (cotton). Candidates should have a Ph.D. in Plant Biology, Genetics, Computational Biology or related areas with solid training in plant science, molecular biology, and epigenetics. Bioinformatic and statistical skills are required to analyze sequencing and epigenomic data. The successful candidates should be able to pursue own research interests, as well as to work collaboratively with other postdocs and graduate students in the lab. Salary is competitive with experience. Interested candidates should send a brief statement of career goals and a copy of curriculum vitae. In addition, two to three recommendation letters should be arranged to be sent via email to: Zengjian Jeffrey Chen, Ph.D.D. J. Sibley Centennial Professor in Plant Molecular GeneticsThe University of Texas at AustinInstitute for Cellular and Molecular Biology1 University Station A5000Austin, TX 78712https://polyploidy.biosci.utexas.edu E-mail: zjchen@austin.utexas.eduOffice: 512-475-9327Lab: 512-475-9335
March 14, 2022, Filed Under: NewsBreaking News Fellow of American Society of Plant Biologists Award AUSTIN, Texas, August, 2023. A Molecular Biosciences Faculty Member was awarded an American Society of Plant Biologists’ award. Read full story. Genomes Assembled from Five Cotton Species Could Lead to Better Varieties AUSTIN, Texas, April 20, 2020. Cotton producers in Texas, elsewhere in the US and around the world are looking for new varieties that can better withstand droughts, pests and pathogens, yet yield higher-quality fibers for the textile industry. To help accelerate the breeding and improvement of cotton varieties, researchers from The University of Texas at Austin and elsewhere teamed up to produce the reference-grade genomes of all five species, including two cultivated cottons. Their results were published in the journal Nature Genetics. Read full stories from NSF, Texas AgriLife, and HudsonAlphA. Researchers Create Largest Ever Map of Plant Proteins and Their Assemblies AUSTIN, Texas, April 2, 2020. In a new paper in Cell, researchers at The University of Texas at Austin offer the largest survey to date of proteins in plants, examining 13 different species across 1.1 billion years of plant evolution. Their findings could have practical applications such as increasing crop yields, understanding disease and stress resistance in plants and informing biofuel production. Read full story. Scientists Uncover RNA Silencing Technique to Change Seed Size in Plants AUSTIN, Texas, January 28, 2019. In a development with promising implications for crop farmers in the U.S. and around the world, scientists at The University of Texas at Austin have figured out how to get some plants to produce nearly one-third bigger seeds. Read full story and article in the journal Proceedings of the National Academy of Sciences. Biologists Find Day and Night Pathways Regulating Plant Growth Vigor AUSTIN, Texas, May 7, 2018. Scientists are slowly unravelling the complex molecular pathways that regulate growth vigor in plant hybrids, with the goal of eventually developing hybrid crops that can grow faster and more productively, while at the same time doing a better job of resisting stress such as heat, drought and pests. Many crops such as corn are grown as hybrids for better yield and traits. Read full story and article in the journal Proceedings of the National Academy of Sciences. First Step Taken Toward Epigenetically Modified Cotton AUSTIN, Texas, May 31, 2017 — With prices down and weather patterns unpredictable, these are tough times for America’s cotton farmers, but new research led by Z. Jeffrey Chen at The University of Texas at Austin might offer a break for the industry. He and a team have taken the first step toward a new way of breeding heartier, more productive cotton through a process called epigenetic modification. Read full story and article in the journal Genome Biology.
October 1, 2020, Filed Under: NewsOther News Upland cotton: an improved sequence will advance fiber, fuel and food applications April 11, 2017 /PRNewswire-USNewswire: A consortium led by Z. Jeffrey Chen of The University of Texas at Austin and Jane Grimwood and Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology has made publicly available a significantly improved high-quality genome sequence of Upland cotton (Gossypium hirsutum). This sequence of the species making up greater than 90% of the world’s spinnable cotton fiber builds upon previous genome sequences published in the past five years. The data is downloadable at DOE JGI Phytozome. Read full story. April 20, 2015 A University of Texas at Austin scientist, working with an international research team, has developed the most precise sequence map yet of U.S. cotton and will soon create an even more detailed map for navigating the complex cotton genome. Read Full Story. The research in the USA team is supported by NSF and Cotton Incorporated. Read more June 3, 2013 In 2008, Jeff Chen caused a stir in the world of plant biology when he identified a key mechanism of “hybrid vigor” in the common experimental plant, Arabidopsis. Now, thanks to NSF…he and his colleagues are expanding their investigation of hybrid vigor to corn, which is the biggest crop in the United States. Advances in understanding hybrid vigor in corn could lead to big increases in yield. Read Full Story. September 16, 2012 Congratulations to Danny Ng, who is now an Assistant Professor of Biology at Hong Kong Baptist University.Read more April 11, 2012 Seed size is controlled by small RNA molecules inherited from a plant’s mother, a discovery from scientists at the University of Texas at Austin that has implications for agriculture and understanding plant evolution. NSF News from the Field and Read more December 20, 2011 Jeff Chen is elected as a Fellow of American Association for the Advancement of Science (AAAS). In November 2011, the AAAS Council elected 539 members as AAAS Fellows. These individuals will be recognized for their contributions to science and technology at the FellowsRead more November 9, 2010 Fulbright Scholar at Cambridge – Plant geneticist Z. Jeff Chen has been awarded a Fulbright Scholarship to work at the University ofRead more September 15, 2010 Cotton Fiber Genomics – Dr. Z. Jeffrey Chen and his colleagues will use next-generation DNA sequencing technologies to study the genomics of fiber production in cotton, the largest source of natural and renewable fiber in the world, with a $3.8 million grant from the National Science Foundation (NSF). Read full story. May 22-23, 2009 Misook Ha doctoral convocation was held on May 23, proceeded by Vikram Agarwal undergraduate convocation on May 22. Misook will work on computational and statistical analysis of gene expression and chromatin data in polyploids. Vikram graduated with several prestigious awards, including a predoctoral fellowship award from the NSF. He will attend the graduate school at MIT in Fall 2009. Congratulations!Read more January 27, 2009 Misook Ha published a first-author paper, entitled “Duplicate genes increase expression diversity in closely related species and allopolyploids” in the Proceedings of National Academy of Sciences of the USA (PNAS). Congratulations!Read more January 15, 2009 Dr. Zhongfu Ni, a former postdoctoral fellow and visiting scientist from China Agricultural University, Beijing, and Eun-Deok Kim, a current Ph.D. student in Plant Biology, were co-first authors of a recent discovery in the Chen Laboratory that reveals how plants grow bigger and more vigorously through changes in their internal clocks. The work was published in the journal Nature. Nature highlighted the work in the subtitle of the cover (Hybrid Vigour – Plants seize the day) and featured the research in the Authors page Abstractions and in the Podcast (Big Plants). Nature Review Genetics featured the Research Highlight “Plant Development: Growing with Time”. BBC World Service aired a segment on 5-7 December 2008. December 19, 2008 The third-floor lunch party attracted over 40 students, postdocs, and staff members from the Chen lab, Pierce-Shimomura lab, Sullivan lab, Trent lab, and Whiteley lab, all housed in the third floor of the Neural and Molecular Sciences (NMS) Building.Merry Christmas and Happy New Year!Read more December 4, 2008 Misook Ha graduated in December 2009 with a Ph.D. in Cellular and Molecular Biology (Bioinformatics and Computational Biology track). She will work as a postdoctoral fellow in Computational Biology on elucidating the mechanisms for expression evolution in ArabidopsisRead more November 24, 2008 Circadian Rhythms and Hybrid Vigor – Hybrid plants, like corn, grow bigger and better than their parents because many of their genes for photosynthesis and starch metabolism are more active during the day, report researchers from The University of Texas at Austin in a newRead more November 21, 2008 The annual Cotton Fiber Genomics project meeting was held in Austin. The project was funded by the National Science Foundation and focused on “Genetic and Functional Genomic Analysis of Early Events in Cotton Fiber Development”. The attendees of the meeting include:PI: Chen Lab (David Pang, Yuki Guan, Misook Ha, Vikram Agarwal, UT-Austin)Co-PI: Triplett Lab (He Jim Kim, Doug Hinchliffe, USDA-ARS/UNO)Co-PI: David Stelly (Shivapriya Manchali, Texas A&M)Co-PI: Peggy Thaxton (MississippiRead more
January 27, 2009, Filed Under: Breaking News, NewsApril 20, 2015 AUSTIN, Texas, April 20, 2015 – A University of Texas at Austin scientist, working with an international research team, has developed the most precise sequence map yet of U.S. cotton and will soon create an even more detailed map for navigating the complex cotton genome. Full Story. The research in the USA team is supported by NSF and Cotton Incorporated.