Gene List – Pilot Set I | Pilot Set I | Pilot Set II | Pilot Set III | No.Gene IDGene NameOligo SequenceSource *EST IDStock IDSeq Verification **1AC007584/MJB20.12putative HMG proteinTCGCTACTGTTGGTAAGGCTGCTGGAGCTAGATGGAAGGCAATGACTGATGAAGATAAAGCTCCTTACGTABRCF20020ATTS6059+2AF058919/F6N23_25hypothetical protein – FRICTGGCCCCAAATTCATATTCTCCAGGTCACGGACATAGACTTCATCGACAGTACTCTCCGTCTTTGGTTCKDRIAV541057RZ71e05+3U93215 /T6B20.22putative TCP1-chaperonin cofactor AGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGGTAAACABRCT1408346F1T7+4AC006932/T27G7_14histone deacetylase, similar to HDA1 protein (HD3-2)AGCCTCTACTTTTACAACACAAAGGATGACGTTGACGCCTTCATCGTTGCGCTGGCAGACACTGTGAGCTgDNA (HDA8(3/2)) 5AC001229/F5I14_3identical to flowering signals mediating protein FTTCGTGTTTATATTGTTTCGACAGCTTGGCAGGCAAACAGTGTATGCACCAGGGTGGCGCCAGAACTTCAAKDRIAV563203RZ87e01+6AC013289/T6C23_3putative chromomethylaseAACAGAAGTACATTCAAGTAGGTAACGCTGTAGCTGTGCCAGTAGCGAAGGCCCTTGGATATGCTTTGGGKDRIAV539316RZ41g10+7AC007209/F14O4.6putative chromodomain-helicase-DNA-binding protein / SNF2 familyTTCAGACTGAGCGACCAACGATAACAAACTCTAACTCGCTGGGAATACTCGGCCCTGGACCATTGGATAGABRCH36019172L20T7–8AC004684/F13M22.13putative MYB family transcription factor – AS1GAGACGCAGAGGCCAAAGACCAGAAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTgDNA (Asym) 9AF002109/T28M21.16putative nematode-resistance proteinGGAGATGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCACTGAGTCAGATATTTATGGAGCCGACGTATKDRIAV555067SQ183b01–10AC003680/F17K2.19MADS-box protein (AGL20)GCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATACTAAGGATCGAGTCAGCACCAAACCGGTABRCH36826179H16T7+11AC005397/T3F17.33putative SNF2 subfamily transcriptional activatorTGTGGGATGGGCAAATCCGGTGAAGAGGTTAAGGACAGATTCTGGTAAAAGACGGCCTAGCCATTTATAGABRCW43888H8A3T7+12AC011623/F24P17_13homolog of ISW2, a SNF2 type DNA-dependent ATPaseACCTTTAGGAAGACAAGCAAGTGAGAGTCCTTCATCGACGAAGAAGCGGAAGCACCTGTCGATGAGATGAABRCR65181163K16T7+13AB025624/MLD14_15putative late embryogenesis abundant protein / tyrosine phosphatase-like proteinTGATGGGTGGTGACAGAGAATTTCAGACCACCGGACTTTTTGCACCTGACTGTTCAGCCGCAAGGTTCACgDNA (Tyrphsph) 14AB025608/K14B15_1superman geneTTTCCAACCCTTTCTCCTCCATCCTCACCAAGATATAGGGCAGGTTTGATCCGTTCCTTGAGCCCCAAGTCalTechBE039294 15AB025639/MWL2_17unknown protein / predicted pseudogeneGGAAAAGACAGCGTCACAGGAACATACAAACTAGCGGTGATTCCACCTCCTCCTAATCATGGGATAAAGCKDRIAV562296RZL51b07+16AC002534/T32N15_8HD2 type, similar to Zea mays HD2-p39 (HD2-1)TCAGGGAATGCACTTGAGTCTCACAACAAGGCCAAGCACGCTGCTGCCAATTTCTTCACTGCTCTTAATGABRCN37851211N2T7+17AL133314/F12A12_10similar to oxidases, mainly gibberellin 20-oxidasesATTCCATAGCCCCAATATTTGGCCTAACCCTGACGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATATKDRIAV561112SQL09h11+18AL132956/F2K15_180putative protein various predicted proteinsACCAGGATGATAGAAGCGAAAACTGGAGAATACAAGCAGTTTCGGTTTCACCAGAGAGGTTTGAGAGCCGABRCAA651535271G6T7–19AL132956/F2K15_210GTPase activating -like proteinGCACCTCCCACTGATGATTTGGTGCTCTATGCAATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGTATTAgDNA (66414) 20AL132956/F2K15_2206-phosphogluconolactonase – like protein(6 PGL)GGTAGACTAACCGCGGATGTTGAAGTGGTTTGGTTCCTTGACCAAGCTGCTGCGTCTAAACTCCCTCATGABRCAA597396197F23T7+21AL132956/F2K15_240hypothetical protein SF16 protein / Calmodulin-binding proteinCCGCAATCGTACGGTTATATTGCCGGTGATGGTTACTTTTGGTACGACATCGACAAGAGAACGAATGCTCgDNA (66417) 22AL132956/F2K15_250RNA-binding – like proteinACTCCCAATAAGGGTAAGTCCATCGAAGACACCAGTAAGGCCGCATTTTCCCCGCGCTGAGTTCAAGTGAgDNA (RNA_Bnd) 23AL132964/T9C5_10putative protein transcription factor IIIC63 – Homo sapiens, EMBL:AF133124ATATGGAGACTTTGCTGTTGATGATGGGAGTGATGGAGAGTTTCAGATATACGAGGAAGAATCTGAGGGAgDNA (CAB62446) 24AL132964/T9C5_20putative protein CGI-141 protein- Homo sapiens, EMBL:AF151899TTGGATTATTCAGCAACCATATATTAGATCGTTCTTTGACAAGTACCGGGGCAAGCGAGTGCCGGTCTAGgDNA (PTTV-1) 25AL132964/T9C5_30pre-mRNA splicing factor SF2-like proteinGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTACGTGGGCTCCCATCATCTGCTTCATGGCAAGATTgDNA (62448) 26AL132964/T9C5_40putative proteinATTACTGGTTAGTGATTGTCAGGATGACTCGTAACGGTGAGATTGTGTTGACCTCACTCGAGTTATATGAgDNA (62449) 27AL132964/T9C5_50putative proteinTGAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGGGACTGGACCTCTTGAAGGTCAAGCAGTTTACACgDNA (62450) 28AL132964/T9C5_70alpha NAC-like proteinACATTGACTTGGTCATGACTCAGGCTGGAGTTTCTCGTAGCAAAGCGGTTAAAGCACTCAAGAGTCACGAgDNA (62452) 29AL132964/T9C5_80putative proteinGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCgDNA (62453) 30AL132964/T9C5_90hypothetical proteinACAATCTGCATCTGGCAAAGGATACGAGAGCCCGACCTCGGACTGGGAACATGTCATCAAGGATGATTGAABRCR30448162K8T7+31AL132964/T9C5_100putative proteinTGGAGGAGGGTTTTTGATGTTAATCCCCACAGGGGTGAACTGTTTTATTACAGTGGCGTGTCCTTGAAGGABRCH76318200H23T7+32AL132964/T9C5_110putative proteinTTCCCATTGGATAGGAGGCGAACTTGTGCGCTCTTCTTATGTTCCAAGTTTATTGCAACTGCAAGTTTAGgDNA (62456) 33AL132964/T9C5_130hypothetical proteinTGCAGTGGAAGCGGAGAAAAAGGCTGAAGCTGAACCAGTAAAGGCTGAGGCTGAACCAGTAAAAGCTGAGKDRIAV530928RZ61a01+34AL132964/T9C5_140hypothetical proteinTGAGAGGTCTTTTGCTGCTGTGAGTCCTTTTTGCAGCCAAGCTGGTGGAGATGGAATGGAGATTAACTAGKDRIAV529695RZ71e01+35AL163816/T20O10_130putative protein – a methyl DNA binding domain similar to MeCP-2 (MBD4)GTTCCCCCTGATCCGAAGCTTGGCTCTCCTTTTCCAAGCACTACTACCACTACTTCAGAGAAGAGCAGTGABRCN37170206F21T7+36AC002330/T10P11_15LuminidependensCCTTCCATCTCCCACTCCATCAACTAATCCTGGAATGAGTGGATGGGGACAAGAAGGGATTCGGAATCCAgDNA (Lumdpns) 37AL049730/T1P17_190Ribosomal protein L7Ae -like various L7Ae ribosomal proteinsACAAGCCCTTGGAAGAGCATGTGATGTAACCAGACCCGTGATCGCTTGTTCCGTTACATCAAACGAGGCTABRCT1419749F11F7+38Z97340/dl4180cFCA gamma protein (Flowering control gene)TCAGGGCCAGCAATTACAGCAGCCGTTTTATTCTTCACTGTATCCAACTCCAGGGGCCAGCCATAATACTABRCT42029110C13T7+39AL021711/F13C5_190putative protein, DNA (cytosine-5-)-methyltransferase / Methyltansferase IGGTCTAGCCCGCGACGAGCATCTTATAAAACTTCCCCAAAACTTTTCGCATTCAACTTACCCTCAGCTTCKDRIAV532210RZ38g04+40AL021635/T12H17_130predicted protein – a methyl DNA binding domain similar to MeCP-2 (MBD1)CTCGCCATTGCAGTCGCCTCTGCTGCATTTCTCAGTGAACTTGTAAGCATGAGCTTACCAGAGAGTATCTABRCZ18415ATTS0790+41AL022197/M7J2_100putative homeodomain-protein, homeodomain protein AHDP (FWA)GGGCATCAATCCAACTGCTGCACTCATTCAAGGTACTGTCAAAAGTGTCGAGACACTCATGGCTCATACTgDNA (FWA) 42AL078470/F19B15_10Cdk-activating kinase CAK1AtCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGACAATGAGTGGACCAGATGAGGATTCTCCGAGAAAGTGKDRIAV440132RZ56h04+43AL031004/F28M20_10putative protein, DNA-binding protein ABF2, Avena fatuaCCAGCGTGTTCCTGAATCTTCTCGGTCTGGACTAGAATGGTGCAACCCAGACTCTTCCACATGTTCAGAGKDRIAV536499SQL01b05+44AL162506/F17C15_160HD2 type, similar to Zea mays HD2-p39 (HD2-3)GCGTTTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTCTCACACAAAGGCCAABRCN65363227D24T7+45AL162873/F8F6_50Terminal flower1 (TFL1)CGTAAATTTGCGGTCGAGTATGATCTTGGTCTCCCTGTCGCGGCCGTCTTCTTTAACGCACAAAGAGAAAABRCT44654129D7T7+46AB005245/MUG13_1helicase-like transcription factor-like protein / DNA dependent ATPaseATAAACCTAACTGCAGCCTCAAGGGTTTACTTGTTTGACCCGTGGTGGAACCCTGCAGTTGAAGAACAGGABRCAA395003108N14T7+47AL356332/T31P16_130MADS box protein FLOWERING LOCUS F (FLF) / FLC???TGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCACTACTTAATTAGWISC 48AL391222/T5K6_30putative protein / MYB DNA-binding-like proteinTTCTCCAAACGAACCCATCTTCTGTCGTGGACCGCCTTTTCATGTCTGTGTAGCTGGAGGTGCACTGTGAKDRIAV523554pAZNII0212+49AL391144/F14F8_220CONSTANSGTAGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAACACAACTCAGTCCAATGGACAGAGAAGgDNA (CNSTNS) 50AL39114/F2K13_150quinone oxidoreductase – like proteinGATGGGCTTGAGAAAGGTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTGGAAAACAAGTTGABRCT2171897C1T7+51AF149413/T1N24_9putative protein, histone deacetylase/AcuC/AphA family protein (HD1-2)CGCTAGAGTTATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATAAKDRIAV566830RZ38a02+52AF058825/F7N22_10putative protein -similar to maize transposon MuDRTCGTGTTGTCCCATATCTTAACGTTGAAGAGGATGCGGACGTTCCTTCAATGGATGGTAGCCACCACTAGgDNA (F7N22) 53AB012248/MXI22_3histone acetyltransferase / homologous to ScELP3 (HAC8)CATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTATACGGAACAGCTGTACCAGTTCATGGTCGAGATABRCN96098245A2T7–54AB009050/MDF20_20transcription regulator Sir2-like protein / Sir2-NADH dependent histone deacetylaseGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTATGCTACGGTGACTAGTCTCAGGACTTACCATAGTCAAABRCT4530586A11T7+55AB011476/MDA7_5heat shock protein 90CGATGCTGACATGCCTCCACTTGAAGATGATGCCGATGCTGAAGGTAGCAAGATGGAGGAAGTTGACTAAKDRIAV439634SQ216a11+56AB008265/MDC12_7histone deacetylase,highly similar to RPD3 (Hd1-3)GGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCAGACGTGAATCCTCCATCGTCTTAAgDNA (HADRPD3) 57AB010076/MUB3_9beta-xylosidase (doesn’t match the gene in EST plate)AAACGCTGTCTCCGGCGGTGGATCGGCGTTTGAAGTTCATATCAAGGTACGAAACGGAGGAGATAGAGAAgDNA (MUB315) 58AB018119/MSN2_14SWI2/SNF2-like protein / DDM1TACAAACCGATATAAGCGATGCGGATCTTGACAGGTTACTTGACCGGAGTGACCTGACAATTACTGCACCgDNA (DDM1) 59AB010700/MUD21_18pectinesterase like proteinATCACTTTGGCATCTCAGGAGTTTTCAGCACCAATGCCATTCAAAGCGTCCCATCAAACTCTCCGCCAACKDRIAV537452SQ202f09–60AB027229FAS1ACATTCTTCTCAAAACGTTGTTTACCTCCATCCACAAAACCACAACCTGCAGTTGAAGACGCAGCAGAGAABRCAA585814106J1T7–61AF003095AP2 domain containing protein RAP2.2 / transcription factor EREBP-like protein ?GATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGAGCTATGGAGCTTAGATGAGATCAATTTCAKDRIAV553751SQ224a03+62AF004393salt-stress induced tonoplast intrinsic protein gamma / putative aquaporinTCGCCGGAATTATCTACGACTTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCTACCACCGATTAKDRIAV550938SQ124e02+63AF014824histone deacetylase, RPD3 homolog (HD1-1)AAGGAACAAACAAGGGTGGGGCGGAGCAGGCGTTTCCTCCTAAAACATAAGACTCGGAGCTTCTAATTTCABRCW43397G11C3T7+64AF044914HD2 type, similar to Zea mays HD2-p39 (HD2-2)CCAGAGCCCCAAGTCTGGAGGTCAATCATCCGGTGGTAACAACAACAAGAAGCCATTCAACTCAGGCAAAgDNA (HD2p32) 65AF083913annexin (AnnAt1)TACCAAAGACACTCGTGGAGATTACGAGAAGATGCTCGTCGCACTTCTCGGTGAAGATGATGCTTAATCAKDRIAV559022SQ191c06–66AF089738plastid division protein FtsZGCACACTGCAGCAATAACAAACGTGTGTGTACTGGTAGTCTGGTACTGCCTTCTGGGATACAGCAAGATGKDRIAV559837SQ167g07+67AF105064GIGANTEA (GI)TGTAATGATGAGTGACTGACGCAATCACTCCCACCGGCGTTGGATTTGCTCTCGCTCGGTGTCTTATATAABRCBE523471M37E4STM+68AF130252calcium dependent protein kinase CP4ACATGAAGGAAACCGAATCATATCTGTCCAAGAACTCGCCGGGGAGATGAGCGTGGGACCGAGTGCATATgDNA (Ca-kns) 69AF176089COP8 homolog – note position verus 139!GGGATTATGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCATGTCTGTTCCTGTCTGAABRCAA394494129O19T7+70AF201456NAC2 (NAC2)GACTGCCTCGGGAAGCAAGACAGGAATTACGGCGACAAGAGCAATGTTAGTCTTCATGTGTTTATGGGTTABRCN37291208P3T7+71AF324693photosystem II type I chlorophyll a/b binding proteinTTCGCTACCAACTTCGTCCCCGGAAAGTGAGTTTAATTTGTGATCGAGTTGTGTGTATCCGGTTTGTTGCKDRIAV520935SQ083b07–72AJ131206microbody NAD-dependent malate dehydrogenaseAAGTGCGCCTTGGCCGTACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGGATKDRIAV525389SQ148e03+73AJ245407syntaxin4 / no predicted protein in genome sequence ???AAGCTCAGCCACCGCCACCTCCGGCTGTGAATCGGCGGCTACTACGCTAAATAATTTTTTTTTTGAGGTTKDRIAV565053SQ003b06+74AJ297264putative heavy metal transporter (hma4 gene) / heavy metal P-type ATPaseCGCATCAAAATGTAGGGACAGAGCGAAGCGTCACAGTGGTAAAAGCTGTTGCAGGAGTTATGCAAAAGAGKDRIAV530075SQ054g04+75D21840MAP kinaseCAAACATGTCGGCTGGTGCAGTCGATTTGCTGGAGAAAATGCTTGTTTTTGAACCAAGCAGACGCATCACKDRIAV530854SQ118e06+76L10692cytosine-5 methyltransferase / MET1TCTAGGTCGTAAGCTCAAAGAAGCCCTACATCTCAAGAAGTCTCCTCAACACCAACCCTAGATAACCACCABRCN38410216P8T7+77U14174KNAT1 knotted-like homeobox protein geneAACCAAAGAAAGCGTCACTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCACCABRCN96067G1B1T7+78U14175KNAT2 knotted-like homeobox protein geneCGCGAATGAATGGAACCCGTTAGCCAAAACGGTCAAGGGCGTAACGAGACATTGTATTGGAAATAGTGGCABRCN65651240N22T7+79U32344Shootmeristemless (STM)GAAGCTCGTCAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACCCTTCGGAGCAACAAAKDRIAV441786RZ33e11+80U84969ubiquitin (UBQ11) gene / polyubiquitin (ubp10) ???AAGGAGTCTACTCTTCACTTGGTGTTGCGTCTGCGTGGAGGTATGCAGATCTTCGTTAAGACTTTGACCGKDRIAV544113SQ175c12–81U89986valyl tRNA synthetase (valRS)AGCACCACCTGGATCTTCAGTTGAGACGGTGAACGAGAACCTCAAAGTATATCTTAAAGTGGACGGAGCCKDRIAV526903SQ109h01+82X83370cyclin delta-2 (CycD2)GAGCAGGCGCGAGTTGCGGTAAGAGCTGTACCTGCAAGTCCAGTTGGAGTGTTGGAAGCAACATGTTTGAgDNA (F14M13) 83Y10580curly leafGGTATGAGCCAGATCGAGCTCCAGCTTGGGCCAAAAAACCTGAAGCTCCTGGTTCTAAGAAAGACGAAAAgDNA (CurlyLeaf) 84Y14072HMG beta1 proteinTGACGAGGATGATGCTGAGGATGGTAGTGAAGAGGAGGAGGACGATGACTAAGAAGCTGAATGTTGGTAGgDNA (HMG) 85Z83833ATSGT d UDP-glucose:sterol glucosyltransferase / ugt80A2TTTTTGGGGAGAACGAGTGCATGCTAGAGGTGTTGGTCCTTCACCAATCCCAGTGGATGAATTCTCACTTgDNA (GlucoTrans) 86AF204968histone H2A (RAT5) / similarity to Picea histone H2A (h2a)ACAAGAAGACACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTABRCT1419449E12T7+87AF213628MOM geneACCGCAACAGAGCTTGAGCAGTGGATTGCAGAGCAACAATGAAGTGGTTTGTCTTTCTGACGACGAGTGAgDNA (MOM) 88AF239718SGS2 gene / RNA-directed RNA polymeraseTTGCAGCTGATTATCTTGCAAGAATCAAAATCCGGTCACGGGAAATGGGAAGTATCGACTCAGCCAAGCCgDNA (71285) 89U01843Landsburg lipoxygenase 1GGTTTGGTTAAGATGCCATACACTTTATTGTTTCCGAGCAGTGAAGGCGGAGTCACCGGCAGGGGAATTCKDRIAV544381SQL14e11+90U35829thioredoxin h (TRX5)ATCGTGTTGTCGGTGCTGCGAAAGATGAGATCAATGAGAAGCTGATGAAGCATGGTGGTCTTGTAGCTTCKDRIAV554324SQ146b05+91AB006696/MAF19.8histone deacetylase, similar to HDA1 protein (HD3-1)CGGAAGCATACCCATTCGAGTCGACATGGCGTGTCATACAAGCGGTATGGCTCTATATCATCCTATCTTTABRCT1380241CT7+92AB025636/MVP2.2putative protein – a methyl DNA binding domain similar to MeCP-2 (MBD2)ACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCTGTAGCTAAAGAAGCABRCH37446181K4T7+93AF058825 / F7N2217putative protein, similar to maize transposon MuDR (GB:M76978)GTCGCCGTTGAGACTAAACGCCCTAGGAAGGAACACGCATGTTCTCGATGTAAAGAAACAGGGCACAATGgDNA (F7N2217) 94AB010069 / MAC9.18LEAFY proteinGCTTGTCGTCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTATGTTCgDNA (Leafy) 95AC006917 / F10B6.34putative protein, Gibberillin-insensitiveTTGCGGCTGCACATATTGGTTCGAATGCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGTTCAACGGCGGgDNA (Gibinsen) 96AL138656/T14E10_180histone acetyltransferase HAT1 / GCN5GCTTTTAAAGACAATGCAAGACCATGCTGATGCTTGGCCTTTCAAAGAACCAGTGGATTCTCGCGATGTCKDRIAV441075RZ38g03+ * KDRI: Kazusa DNA Research Institute; ABRC: Arabidopsis Biological Resource Center; gDNA: genomic DNA amplified with indicated primer in parenthesis;CalTech – California Institute of Technology** + : sequence verified; – : ambiguous sequence or more than one insert; blank: genomic fragments were not sequenced