Gene List – Pilot Set II

| Pilot Set I | Pilot Set II | Pilot Set III |

No.	Gene ID	Gene Name	Oligo Sequence	Source *	EST ID	Stock ID	Seq Verification **
1	AB008103	AtERF-1  for ethylene responsive element	TCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGATCGAGACTCCGGAGAGTTTCG	KDRI	AV567266	APD01a09	+
2	AB008105	AtERF-3  for ethylene responsive element	CGCATCGTCTTCACGGCGACGGAATCCGCCGTTTCAATTCGATCTTAATTTTCCACCGTTGGATTGTGTT	KDRI	AV542347	APD08d08	+
3	AB008107	AtERF-5  for ethylene responsive element	TTCTTAACTTTCCGCTTCTGTCGCCGTTATCTCCTCATCCACCGTTTGGTTATTCCCAGTTGACCGTTGT	ABRC	AA713176	244F24T7	+
4	AF003098	AP2 domain containing protein RAP2.5	TTTGCCTCCTCCATCGGAACAGGCCTGAGCTTTTAACGGTGTCGTTTCAATTCGAAGCGCATGCGTTTCT	ABRC	AI994192	227N9T7	+
5	AF004213	ethylene-insensitive3-like1 (EIL1)	CAGCATTCGATTACAGAGATGATTGGCAAACCGGAGCAATGGAAGGAATGGGGAAGCAGCAGCAGCAGCA	gDNA (EIL1)
6	AF004216	ethylene-insensitive3 (EIN3)	TTGTCTCGGCTTGGTGAATCTCTCTGTCATCATCAGCTTTTAGTTACACACCCGACTTGGGGATGAACGA	KDRI	AV562743	APD10d03	+
7	AF022368	BIPOSTO (BIP)	TAGACGGGAACTTTGCCGGTGTACCAGTTACTAATCAAGCTTGTAGTGGCGGTGACAGTGGCAATGCTTG	ABRC	AW004158	E11H5T7	–
8	AF030132	glutathione peroxidase	CTGCCCCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTCTTTGGAGACGGCATTAAGTGGAACTT	KDRI	AV544762	APD13c09	+
9	AF042196	auxin response factor 8 (ARF8)	CTACAACGCGGGAGCCCTTTGTTTCCCATTTGAAGTCGTTTCCACTCATCTTTATATGCCATTCGTTCGC	KDRI	AV518674	APD19a02	+
10	AF062860	putative transcription factor (MYB4)	AAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATGAGATGCGATGTAGTCGGAG	gDNA (MYB4)	ATTS0380
11	AF062888	putative transcription factor (MYB52)	TGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTTGTCCGTACCACATGTACTATAAGGTGGAC	KDRI	AV567473	APD23b10	+
12	AF062925	transcriptional activator CBF1 homolog (CBF3)	TAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTATAATTTTGATGTCGAGGGA	gDNA (CBF3)
13	AF076277	ethylene response factor 1 (ERF1)	GGTTGTTCTCCGGTTGTGGCGTTGAAGAGGAAACACTCGATGAGACGGAGAATGACCAATAAGAAGACGA	gDNA (ERF1)
14	AF086906	root gravitropism control protein (PIN2)	CTCAGCACTGCGGTTATATTCGGAATGCTGGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGG	KDRI	AV548293	APD35e11	+
15	AF087015	abnormal floral organs protein (AFO)	TCCTAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTC	KDRI	AV520658	APD43g12	+
16	AF087818	auxin transport protein (PIN3)	TGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCTCAA	ABRC	T04468	35D8T7	+
17	AF176001	putative transcription factor (MYB96)	ATGGTTATTTGATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTCTAG	ABRC	AI992598	E11A6T7	+
18	AF181966	methylenetetrahydrofolate reductase MTHFR1	AGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCGTTT	KDRI	AV533221	APZ13f04	+
19	AF181967	methylenetetrahydrofolate reductase MTHFR2	AGAAGCCGACCCTTCCAGAAACTTGCTCGAGGAGGTGAAGAACAGCTACTATTTGGTAAGCTTGGTGGAG	ABRC	W43508	G12G10T7	–
20	AF217458	heat shock protein 70 (Hsc70-5)	GGCCAAGATTGAGGCGGCAAACAAAGCTGTTTCTAAGATTGGGGAGCACATGTCTGGTGGTTCTGGTGGA	KDRI	AV556863	APZ22g03	–
21	AF217459	heat shock protein 70 (Hsc70-7)	ATCATCCTCAGCCAAAGGTGGAGACAACGGCGGTGATGTGATTGACGCTGACTTCACAGACAGCAATTAA	ABRC	T43623	121K20T7	+
22	AF242580	E2F transcription factor-1 E2F1	GAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTTACCATACCACATTA	gDNA (E2F)
23	AF308595	putative DNA repair protein and transcription	GAAAGGCTCTAAAGACGCGACGAAGCATGGGATCGATGAGTGCAATGTCCGGTGCAAATGGAAGGGTCTA	gDNA (PTTVRep)	AI993350
24	L05363	polyubiquitin (ubq3)	GCTGGAAAACAGCTTGAGGATGGTCGCACACTTGCAGATTACAACATCCAGAAGGAGTCGACTCTTCACT	KDRI	AV520099	APZ24b04	+
25	L08789	negative regulator of the ethylene response	CAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAAATACCCCCGGTCCATTCAAAAGTTGTTAT	KDRI	AV530167	APZ26c10	+
26	L13922	ubiquitin activating enzyme E1-related protein	AACGGCTCAGTACTCCCAGATGACCTTATCCATGAGATGTGTCGCTTTGGTGCCTCAGAGATTCATGTGG	ABRC	AI992933	111K11T7	+
27	L14845	nuclear-encoded chloroplast stromal	GAGACTCGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTAGATG	ABRC	AI994039	143K7T7	–
28	L29083	(clone At-ASN1) glutamine-dependent asparagine	GGCAAGAACGTGGCATTGACCATACCACCACTTAAGGCAATTGACAACATGCCGATGATGATGGGTCAAG	gDNA (ASN1)	BE038940
29	M55552	transcription factor (AGL4)	CTGGATGCTGTGAGCGATACTTCTTCCCCCAATAAAGATCTTAAGCAAGTACTGGTGGGGTCTTCGTGGT	gDNA (AGL4)	BE521078
30	M55553	transcription factor (AGL5)	ACATCTAGTCGCAAGCTGAGGGGAACCACTAGTGTCATACGAACCTCCAAGAGACGGTTACACAAACGGG	KDRI	AV557878	APZ27g11	+
31	U01103	PSI type III chlorophyll a/b-binding protein	ATCACTTGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGAGGTGATCATCATCT	KDRI	AV520130	APZ37d04	+
32	U02949	Columbia cytosolic triose phosphate isomerase	GGTTTCTTGGTCGGTGGTGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCCGCAGAGGTGAACA	KDRI	AV544081	APZ63d07	+
33	U09341	clone HAT9 homeobox protein	GGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTTTACTAACCCAT	gDNA (HAT9hmbx)	BE039372
34	U11501	Columbia endomembrane-localized small heat	AGGGACACAAGCGTGGCTCTGTCTCCAGCAAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAA	ABRC	AA597970	248L22T7	+
35	U13949	heat shock protein AtHSP101 (Athsp101)	AAGTCAGATGTGCTGATTCATATTGCTAACGGGCCAAAGAGAAGTGATGCAGCTCAGGCGGTGAAGAAGA	ABRC	BE530525	M77N13T7	+
36	U18410	IAA8 (IAA8)	GGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCGAAGAACAAAGAGCGGGTTTGAAACG	KDRI	AV533026	APZL16d11	+
37	U28422	DNA-binding protein CCA1 (CCA1)	GCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGCAAAGTTTTACATATCGAGAAGAACACAGAGAGG	ABRC	AI992931	109K9T7	+
38	U29699	light-dependent NADPH:protochlorophyllide	TTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTTTGGGAAGTCAGCGAGA	ABRC	T46041	134K24T7	+
39	U43489	xyloglucan endotransglycosylase-related	CTCTGATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGAAGTCCAGAGTCTGATGAACACAT	KDRI	AV541643	APZL16b11	+
40	U49075	early auxin-induced (IAA19)	ATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGTAGACGAGTGATGATGACTTGAACAAGAAGCA	gDNA (IAA19)	ATTS4440
41	U51036	aspartic proteinase	GGCAGCCTAAACACGATCGGGTTGGTGTCGCGTATGGTTTTAGTATGAACAATCTGCGTCTCAAGTGTTG	KDRI	AV537387	FB005g03	+
42	U68017	heat shock transcription factor 4 (AtHSF4)	TGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGACTTTCACGCGCCGTTGTGGAAAAGCAGCAA	ABRC	AI993273	190J12T7	–
43	U74669	ras-related small GTPase (AtRAB11c)	AGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTATCTTTCATCGAGACATCGGCTCTCGAGGCATTA	ABRC	AI992584	E7H1T7	+
44	U85254	homeodomain protein AHDP	ATCATGCACCGTTCAGAAGATTCGTGCCGCTTTACAATGCGAAAGCTGATCTTGATCAAGACTGGCGCGT	ABRC	AI993655	230N6T7	–
45	X03908	gene (LHCP AB 180) for chlorophyll a/b binding protein	GCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT	gDNA (LHCPAB)	BE038832
46	X16076	hsp17.6  for 17.6 kDa heat shock protein	GGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGGTGCCAGAGAAAAAGCCA	gDNA (heatshck)	AI998904
47	X17293	Arabidopsis HSP17.4 gene for 17.4kDa heat shock protein	AGGAAGTAAAGGCGAGTATGGAGAATGGGGTGTTGTCGGTTACGGTGCCGAAAGTTCAGGAGAGTAAGCC	ABRC	AA597555	201G20T7	+
48	X17295	Arabidopsis HSP18.2 gene for 18.2kDa heat shock protein	GCAACAATGGAGAATGGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCTGAGAAGAAGCCTCAAGTCAAGT	ABRC	AA395897	303B6T7	+
49	X63443	heat shock protein hsp 17.6 – II	TGAGATCAAGGTTCAGGTCGAGAACGACAATGTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAA	ABRC	ATTS4344	ATTS4344	+
50	X63445	nitrilase I	CCGTAAATGAGCACCCGAGGAAATCGGTTACATTCGTGACGAAGGTGGAGAAAGCTGAGGATGACTCAAA	gDNA (ntrlsl)	BE523604
51	X64460	Lhb1B2 gene for photosystem II chlorophyll a/b binding	CCAACTTCGTCCCCGGAAAGTGAGCGGCTGCTTATTATGTGAATGAGAGCAGAGAAAGAGAGTTTGTTTG	gDNA (Lhb1B2)	BE039274
52	X65549	ANT1  for adenylate translocator	GTGCTGGTGTGCTTTCCGGTTACGACAAATTGACTCTGATTGTCTTCGGTAAGAAGTACGGATCAGGAGG	KDRI	AV537563	FB011f10	+
53	X66719	EAT1  for ethylene forming enzyme	TCGATCGCATCATTCTATAATCCGGGAAGCGACTCTGTTATTTTTCCGGTGCCGGAGCTGATCGGAAAAG	KDRI	AV520506	FB037h02	+
54	X67034	Athb-6	CTCTAATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAAATGGAG	KDRI	AV441576	FB054e08	+
55	X74141	RCI1B	AGGGGGGGAGGGTTGTTACGCGATGTTTCTGCCACCAAATCGATCTCAAAATCCCCATAACCTTTGCTCA	KDRI	AV561268	FB058a07	+
56	X75162	gene for BBC1 protein.	CAAGTTCAAGGAGACTACTTGCCTATTGTACGTGAGAAGCCTACCATGGAACTCGTCAAGCTGACTTCAG	KDRI	AV553216	FB071a04	+
57	X83380	gibberellin 20-oxidase (1425 bp)	TGTTTGCATAGAGCGGTTGTGAATAGAGAGAGCGCGAGAAAATCGATGGCGTTTTTCTTGTGTCCGAAGA	KDRI	AV563665	RZ04h09	–
58	X89504	17.6kDa HSP protein	GTTGGAAGTGACTAATCCGAAACTTCCTCCTCCTGAGCCAAGAAACCCAAGGCAAAACAAGGTCCAATTC	gDNA (HSP)	AI998408
59	X98313	peroxidase, prxr1	GAGTTCACTAGGGCAATCCAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGA	KDRI	AV520522	RZ08f07	–
60	X98314	peroxidase, prxr2	GGAAAGGATTGTTCACGTCGGATCAAGTCTTATTCACGGATCGTCGGTCAAAGCCAACCGTTGACTTATG	KDRI	AV538124	RZ110b10	+
61	X98317	peroxidase, prxr5	GAGACCAACCCGCTCACGGGAGACCAAGGGGAGATCAGGAAGGATTGTCGTTATGTGAACTAATATTGAT	KDRI	AV520825	RZ119e023	+
62	X98322	peroxidase, prxr10	GTGGCTCGGTATGCTAATAACAACGCCTTCTTCAAGCGTCAGTTCGTTAGAGCAATGGTGAAGATGGGAG	ABRC	AI994196	72E4T7	+
63	X98453	peroxidase, ATP N	TCAGATTCTGTTCTCGAGTGACTTAGCCGTGAACACCACAAAGAAACTAGTGGAGGCTTATAGTCGGAGC	ABRC	AI994642	183P17T7	+
64	X98775	peroxidase ATP12a, EST clone 96H1T7	CGGACTGGAGTTCTTACGGGTAAGGCCGGGGAGATCCGTAAGACGTGTCGGTCTGCTAATTAAGAGATAT	ABRC	AI099825	126F23T7	+
65	X98803	peroxidase ATP14a	CGAGAAAGATGGTGACGGATATAGCCAACGGTAACGATTTCTTGGTTAGGTTTGGTCAGGCTATGGTGAA	ABRC	H36849	179O2T7	+
66	X98805	peroxidase ATP19a	AACGCTTCGCCGGAGGATCGGAGCAAGAGTTCTTTGCTGAGTTCTCCAACTCCATGGAGAAAATGGGAAG	KDRI	AV541742	RZ130a04	–
67	X98806	peroxidase ATP20a	AATCTTGGCCGCGTTGGGGTTAAGGTTGGGAATCAAGGCGAGATTCGAAGGGACTGCTCTGCTTTTAACT	ABRC	AI993026	111D16T7	–
68	X98807	peroxidase ATP21a	CCTCAAACTCTACGGCCTTTAACCGCGCTTTTGTGATAGCCATGACCAAACTTGGCCGTGTTGGAGTTAA	ABRC	R29841	161P11T7	+
69	X98808	peroxidase ATP3a	CATCCTTGAGGTTCGGAACCGAGTTCGGGAAGTCGATGGTCAAAATGAGTCTCATAGAAGTTAAGACTGG	KDRI	AV544838	RZ139b10	–
70	X98855	peroxidase ATP8a	GTGGATACGTGGTTCAGCTTAAGCAAATGTGCCCGATCGGTGTCGACGTAAGAATCGCAATCAACATGGA	KDRI	AV541045	RZ159c05	+
71	X98925	stromal ascorbate peroxidase	ATGCGAAACTCAGCAATCTTGGCGCAGAATTTAACCCTCCGGAGGGTATCATTATCTAATGGGGCACCTA	KDRI	AV539751	RZ159d09	+
72	X98926	thylakoid-bound ascorbate peroxidase	GACTACGCTGAAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGGGCATAGTCA	KDRI	AV518387	RZ169f03	+
73	Y08061	endomembrane-associated protein	GAACCGGAGACAACGACGACAGCGCCAGTGGCTGAACCACCAAAGCCTTGATTTGTTTTCAAGATGGTAT	KDRI	AV559500	RZ170e07	+
74	Y08781	peroxidase ATP22a	GGAGGAGAGACGGCAGACTATCGACAGTGGCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATT	ABRC	H76426	194G3T7	+
75	Y11788	peroxidase ATP24a	CAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTG	KDRI	AV544290	RZ32f04	+
76	Y11789	peroxidase ATP23b	AGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTTGTTCGGGATACAAACGCGGCGAATC	ABRC	T41878	109F3T7	+
77	Z14991	UBC10  for ubiquitin conjugating enzyme homolog	AAGTACGAGTCCACTGCACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAATGGAAAATCCCACCTACT	gDNA (UBC10)	BE037619
78	AF047976	putative ethylene receptor (ERS2)	GATGTCGAGAGGCGGTGGATATTCTGGAGAAACGTTTAGAACCTCAACTCCTCCGTCTACTAGCCACTGA	ABRC	BE527688	M69A08STM	–
79	AF115800	cultivar Bu-0 floral homeotic protein AP3	TTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTA	KDRI	AV533954	APZ07a07	+
80	AF115830	cultivar Bretagny floral homeotic protein PI	CGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGATGGAGATCCTTATATCAAAGAGGAGAAAT	KDRI	AV530577	APZ07h01	+
81	D83511	DNA for ATMYC1	CGGGGCTGCAGTTGCGTCCGTAGGAATGATTAAGCGAGAGCTGAGAAGAGTCATTGGTGATTTGTTTTAA	KDRI	AV521644	APZ23c06	+
82	L24119	ETR1	ATCACTAGACAACATAAGAGATGTTCTGTCTGATCTTCTCGAGCCCCGGGTACTGTACGAGGGCATGTAA	gDNA (ERT1)	AW004547
83	M83534	isocitrate lyase gene	TCAAGCGCATGAACCTCAACGAGAACGAGAAGAATCAGAGACTGAGCGAGTGGTTAACCCATGCAAGATT	gDNA (isolyase)	BE524514
84	M84701	bete-3 tubulin (TUB3)	TACCAGCAATACCAAGATGCAACGGCTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGTGAATACC	KDRI	AV552762	APZ34a06	+
85	U19382	putative chlorophyll synthetase (G4)	GTACCAGGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGA	KDRI	AV520285	APZL32a02	–
86	U21952	ethylene response sensor (ERS)	AAGCAGTAGCAGTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGA	ABRC	AI994410	144E10T7	+
87	U43147	catalase 3 (CAT3)	GGCTGGAGACAGGTACAGATCATGGGCACCAGACAGGCAAGACAGGTTTGTTAAGAGATGGGTGGAGATT	KDRI	AV565434	APZL57h03	–
88	U66916	12S cruciferin seed storage protein (ATCRU3)	CGGGTAGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTCCAGATCTCTCCCGA	gDNA (ATCRU3)	BE523614
89	X13611	ats1A gene for ribulose 1.5-biphoshate	ATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCGTTGCCTACAAGCCACCAAGCTTCACCGGTTAA	gDNA (ats1A)	BE039268
90	X14312	Arabidopsis CRA1 gene for 12S seed storage protein	GTTGAGTTCAAAACAAACGCTAACGCGCAAATCAACACTCTGGCGGGACGAACCTCAGTCTTGAGAGGTT	gDNA (CRA1)	BE523607
91	X53435	auxin-inducible gene Aux2-11	GTTTTACCTGAAGCTACTGAGAAAGAGATTGAATCCACTGGAAAAACTGAAACCGCTTCTCCTCCAAAGG	KDRI	AV553750	FB010e02	+
92	X71878	Lhcb4	CAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTTCTCCTCATCTTAA	gDNA (Lhcb4)	BE039282
93	X95295	gst6	TAGCGAGTGGATTAAGAAGATCTCTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG	KDRI	AV544289	RZ06c11	+
94	Y11122	ATHB-14	GGAAACGACTCTTGTAGCCCTTCAAGACATAATGCTAGACAAGACCCTTGACGAACCTGGTCGTAAAGCT	KDRI	AV523113	RZ182f08	+
95	U39449	actin (ACT1)	GCAGATGTGGATCGCAAAGGCAGAGTATGACGAGTCAGGTCCATCGATTGTTCACAGGAAGTGCTTCTGA	KDRI	AV564325	APZL44c05	+
96	U39480	actin (ACT3)	GCAGATGTGGATCGCAAAGGCAGAATATGATGAGTCAGGCCCGTCGATTGTTCACCGGAAATGCTTTTGA	ABRC	AI995092	187A14T7	+

*  KDRI: Kazusa DNA Research Institute; ABRC: Arabidopsis Biological Resource Center; gDNA: genomic DNA amplified with indicated primer in parenthesis
** + : sequence verified;?- : ambiguous sequence or more than one insert; blank: genomic fragments were not sequenced