Qiao Lab

Publications

Google Scholar: https://scholar.google.com/citations?user=yXz-WigAAAAJ&hl=en

2025

Shao Z, Qiao H* (2025) Protocol for Chromatin Immunoprecipitation followed by re-Chromatin Immunoprecipitation (ChIP-reChIP) to Investigate Bivalent Histone Modification Dynamics in Response to Warm Ambient Temperature. (Accepted by Star Protocols)

Chen C-Y, Shao Z, Wang G, Zhao B, Hardtke HA, Leong J, Zhou T, Zhang YJ, Qiao H*. (2025) Histone Acetyltransferase HAF2 Associates with PDC to Control H3K14ac and H3K23ac in Ethylene Response. Cell Reports. https://www.cell.com/cell-reports/fulltext/S2211-1247(25)00351-1

2024

Shao Z, Bai Y, Huq E, Qiao H*. (2024) LHP1 and INO80 cooperate with ethylene signaling for warm ambient temperature response by activating specific bivalent genes. Cell Reports. https://www.cell.com/cell-reports/fulltext/S2211-1247(24)01109-4?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124724011094%3Fshowall%3Dtrue

Shao Z, Bian L, Ahmadi SK, Daniel TJ, Belmonte MA, Burns JG, Kotla P, Bi Y, Shen Z, Xu S-L, Wang ZY, Briggs S, Qiao H*. (2024) Nuclear pyruvate dehydrogenase complex regulates histone acetylation and transcriptional regulation in the ethylene response. Science Advances. https://www.science.org/doi/full/10.1126/sciadv.ado2825

Feng S, Jiang X, Huang Z, Li F, Wang R, Yuan X, Sun Z, Tan H, Zhong L, Li S, et al. (2024) DNA Methylation Remodeled amino acids biosynthesis regulates flower senescence in carnation (Dianthus caryophyllus). New Phytologist. https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.19499

Chen C-Y, Shao Z, Wang G, Zhao B, Hardtke HA, Leong J, Zhou T, Zhang YJ, Qiao H*. (2024) Histone acetyltransferase HAF2 associates with PDC to control H3K14ac and H3K23ac in ethylene response. BioRxiv. https://pubmed.ncbi.nlm.nih.gov/38260516/

Shao Z, Chen C-Y, Qiao H*. (2024) How Chromatin Senses Plant Hormones. Current Opinion in Plant Biology. https://pubmed.ncbi.nlm.nih.gov/38941723/

2023

Shao Z, Bian L, Ahmadi SK, Daniel TJ, Belmonte MA, Burns JG, Kotla P, Bi Y, Shen Z, Xu S-L, Wang ZY, Briggs S, Qiao H*. Nuclear pyruvate dehydrogenase complex regulates histone acetylation and transcriptional regulation in the ethylene response. bioRxiv. 2023.10. 25.564010.

Wang W, Guo W, Le L, Yu J, Wu Y, Li D, Wang Y, Wang H, Lu X, Qiao H, et al. Integration of high-throughput phenotyping, GWAS, and predictive models reveals the genetic architecture of plant height in maize. Molecular Plant https://pubmed.ncbi.nlm.nih.gov/36447436/

Huang X, Tian H, Park J, Oh D-H, Hu J, Zentella R, Qiao H, Dassanayake M, Sun T-P. The master growth repressor DELLA binding to histone H2A is essential for DELLA-mediated global transcription regulation. Nature Plant. https://pubmed.ncbi.nlm.nih.gov/37537399/

Shang F, Wang R, Tan H, Zhong L, Cheng Y, Bao M, Qiao H, Zhang F. Histone H3K4 methyltransferase DcATX1 promotes ethylene induced petal senescence in Carnation (Dianthus caryophyllus L.). Plant Physiology. https://pubmed.ncbi.nlm.nih.gov/36623846/

Ando A, Kirkbride R, Qiao H, Chen Z. (2023) Endosperm and maternal-specific expression of EIN2 affects endosperm cellularization and seed development in Arabidopsis. Genetics. https://pubmed.ncbi.nlm.nih.gov/36282525/

2022

Wang W, Guo W, Le L, Yu J, Wu Y, Li D, Li D, Wang H, Qiao H, Gu X, et al. (2022) Integrating high-throughput phenotyping, GWAS and prediction models reveals the genetic architecture of plant height in maize. Molecular Plant DOI:https://doi.org/10.1016/j.molp.2022.11.016.

Liu X, Zhang L, Xu Z, Xiong X, Yu Y, Wu H, Qiao H, Zhong J, Zhao Z, Dai J, et al. (2022) A functionalized collagen-I scaffold delivers microRNA 21-loaded exosomes for spinal cord injury repair. Acta Biomaterialia. https://pubmed.ncbi.nlm.nih.gov/36270583/

Shao Z, Zhao B, Kotla P, Burns J, Tran J, Ke M, Chen X, Browning K, Qiao H*. (2022) Phosphorylation status of B beta subunit acts as a switch to regulate the function of phosphatase PP2A in ethylene-mediated root growth inhibition. New Phytologist. https://pubmed.ncbi.nlm.nih.gov/36073540/

Zhao B, Shao Z, Wang L, Zhang F, Daveraj Chakravarty, Dong J, Song L, Qiao H*. (2022) MYB44-ENAP1/2 restricts HDT4 to regulate drought tolerance in Arabidopsis. PLoS Genetics. https://pubmed.ncbi.nlm.nih.gov/36413574/

Le, Liang; Guo W; DD; ZX; WW; YJ; WH; QH; ZC; PL, Guo W, Du D, Zhang X, Wang W, Yu J, Wang H, Qiao H, Zhang C, Pu L. (2022) A spatiotemporal transcriptomic network dynamically modulates stalk development in maize. Plant Biotechnology Journal. https://pubmed.ncbi.nlm.nih.gov/36070002/

Shao Z, Zhao，Bo, Kotla P, Burns JG, Tran J, Ke M, Chen X, Browning KS, Qiao H*. Phosphorylation status of B beta subunit controls PP2A activity in ethylene-mediated root growth inhibition. bioRxiv.

Zong W, Kim J, Bordiya Y, Qiao H, Sung S. ABA negatively regulates the Polycomb-mediated H3K27me3 through the PHD-finger protein, VIL1. New Phytologist . https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9673473/

Feng S, Wang RM, Tan H, Zhong LL, Cheng YJ, Bao MZ, Qiao H, Zhang F. Histone H3K4 methyltransferase DcATX1 promotes ethylene induced petal senescence in carnation. bioRxiv

2021

Yu YZ, Liu XZ, Zhao Z, Xu ZJ, y Qiao, Zhou YS, Qiao H, Zhong JJ, Dai JW, Suo GL. The extracellular matrix enriched with exosomes for the treatment on pulmonary fibrosis in mice. Frontiers in Pharmacology. https://pubmed.ncbi.nlm.nih.gov/34938180/

Zhao B, Wang LK, Shao ZY, Chin K, Chakravarty D, Qiao H*. ENAP1 retrains seed germination via H3K9 acetylation mediated positive feedbackregulation of ABI5 . PLoS Genetics. https://pubmed.ncbi.nlm.nih.gov/34910726/

Qiao H*, Stepanova A*. Cell signaling and gene regulation. Current Opinion in Plant Biology.https://www.sciencedirect.com/science/article/abs/pii/S1369526621001072

Wang LK, Zhang ZY, Zhang F, Shao ZY, Zhao B, Huang A, Trans J, Hernandez F, Qiao H*. EIN2-directed histone acetylation requires EIN3-mediated positive feedback regulation in response to ethylene. The Plant Cell. https://pubmed.ncbi.nlm.nih.gov/33793786/

2020

Wang LK, Ko E, Tran J, Qiao H*. TREE1-EIN3–mediated transcriptional repression inhibits shoot growth in response to ethylene. Proc. Natl. Acad. Sci. USA. https://pubmed.ncbi.nlm.nih.gov/33139535/

Wang L, Qiao H*. Chromatin regulation in plant hormone and plant stress responses. Current Opinion in Plant Biology. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8237520/

Qiao Y, Xu ZJ, Yu YZ, Hou SL, Geng JS, Xiao TQ, Liang Y, Dong Q, Mei Y, Wang B, Qiao H et al. Single cell derived spheres of umbilical cord mesenchymal stem cells enhance cell stemness properties, survival ability and therapeutic potential on liver failure. Biomaterials. https://pubmed.ncbi.nlm.nih.gov/31670080/

2019

Zhou Y, Xu Z, Yu Y, Cao J, y Qiao, Qiao H, Suo G. Comprehensive analysis of lncRNA-associated ceRNA network identifies neuroinflammation biomarkers for Alzheimer’s disease. Molecular Omics. https://pubs.rsc.org/en/content/articlelanding/2019/mo/c9mo00129h/unauth

Wang L, Qiao H*. New insights in transcriptional regulation of the ethylene response in Arabidopsis. Frontiers in Plant Science. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591485/

Wang L, Zhang F, Qiao H*. Chromatin regulation in the ethylene response. Small methods. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238466/

2018

Xiao T, Xu Z, Zhou Y, Zhang H, Geng J, Liang Y, Qiao H, Suo G. Loss of TP53I11 enhances the extracellular matrix‐independent survival by promoting activation of AMPK. IUBMB Life. https://pubmed.ncbi.nlm.nih.gov/30376610/

Xiao T, Zhang H, et al. TP53I11 Suppresses Extracellular Matrix-independent Survival and Mesenchymal Transition in Mammary Epithelial Cells. bioRxiv.

Zhou Y, Xu Z, Zhang F, Zhang H, Xiao T, Hou S, Qiao H, Harismendy O, Wang J, Suo G. Nuclear respiratory factor 1 promotes spheroid survival and mesenchymal transition in mammary epithelial cells (2018) . Oncogene. https://www.nature.com/articles/s41388-018-0349-2

Wang L, Xi Y, Sung S, Qiao H*. RNA-seq Assistant: Machine learning based methods to identify more transcriptional regulated genes. BMC genomics. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053725/

Song Q, Xu D, Fang L, Zhang T, Huq E, Qiao H, Deng XW*, Chen ZJ*. Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis. PNAS. https://pubmed.ncbi.nlm.nih.gov/29735680/

Zhang F, Eun Esther Ko, Qiao H*. Histone deacetylases SRT1 and SRT2 interact with ENAP1 to mediate ethylene-induced transcriptional repression. The Plant Cell . https://pubmed.ncbi.nlm.nih.gov/29298835/

2017

Zhang F, Wang L, Qi B, Zhao B, Ko E, Riggan N, Chin K, Qiao H*. EIN2 mediates direct regulation of histone acetylation in the ethylene response. PNAS, https://pubmed.ncbi.nlm.nih.gov/28874528/

Higlighted in Plantea. https://plantae.org/.

Wang L, Zhang F, Siddharth Rode, Kevin K. Chin, Eun Esther Ko, Kim J, Iyer VR, Qiao H*. Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis. BMC Genomics. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512946/

2016

Zhang F, Wang L, Lim JY, Kim T, Pyo Y, Sung S, Shin C, Qiao H*. Phosphorylation of CBP20 links microRNA to root growth in the ethylene response. PLoS Genetics. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5147770/

Zhang F, Qi B, Wang L, Zhao B, Rode S, Riggan ND, Ecker JR, Qiao H*. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Nature Communications. Version Abstract F1000_prime_recommended.jpg

2013

Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang S-shan C, Schmitz RJ, Urich MA, Kuo D, Qiao H et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. eLife. https://pubmed.ncbi.nlm.nih.gov/23795294/

Before 2013