2024
Kayla H. Szymanik, Dustin C. Hancks, and Christopher S. Sullivan. “Viral piracy of host RNA phosphatase DUSP11 by avipoxviruses.” Biorxiv
2023
Pengbo Cao, Derek Fleming, Dina A. Moustafa, Stephen K. Dolan, Kayla H. Szymanik, Whitni K. Redman, Anayancy Ramos, Frances L. Diggle, Christopher S. Sullivan, Joanna B. Goldberg, Kendra P. Rumbaugh, and Marvin Whiteley. “A Pseudomonas aeruginosa small RNA regulates chronic and acute infection.” Nature, 618, Pp. 358-364
2022
Sylvain Blois, Benjamin M Goetz, James J Bull, and Christopher S Sullivan. “Interpreting and de-noising genetically engineered barcodes in a DNA virus.” PLoS Computational Biology, 18, 11, Pp. e1010131.
2021
Rong Yang, Eunice E Lee, Jiwoong Kim, Joon H Choi, Elysha Kolitz, Yating Chen, Clair Crewe, Nicholas JH Salisbury, Philipp E Scherer, Clay Cockerell, Taylor R Smith, Leslie Rosen, Louisa Verlinden, Denise A Galloway, Christopher B Buck, Mariet C Feltkamp, Christopher S Sullivan, and Richard C Wang. “Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus.” PLoS Pathogens, 17, 5, Pp. e1009582.
Joon H. Choi and Christopher S. Sullivan. “DUSP11 and triphosphate RNA balance during virus infection.” PLOS Pathogens.
2020
Joon H Choi, James M Burke, Kayla H Szymanik, Upasana Nepal, Anna Battenhouse, Justin T Lau, Aaron Stark, Victor Lam, and Christopher S Sullivan. “DUSP11-mediated control of 5′ -triphosphate RNA regulates RIG-I sensitivity.” Genes & Dev.
Katherine B Ragan, Sanchita Bhadra, Joon H Choi, Dalton Towers, Christopher S Sullivan, and Andrew D Ellington. “Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation.” medRxiv.
2019
M Grunewald, Y Chen, C Kuny, T Maejima, R Lease, D Ferraris, D Aikawa, CS Sullivan, S Perlman, and AR Fehr. “The coronavirus macrodomain is required to prevent PARP-mediated inhibition of virus replication and enhancement of IFN expression.” PLoS Pathog, 15, 5, Pp. e1007756.
2018
Rachel Chirayil, Rodney P Kincaid, Christine Dahlke, Chad V Kuny, Nicole Dälken, Michael Spohn, Becki Lawson, Adam Grundhoff, and Christopher S Sullivan. “Identification of virus-encoded microRNAs in divergent Papillomaviruses.” PLoS Pathog, 14, 7, Pp. e1007156.
Rodney P Kincaid, Neena G Panicker, Mary M Lozano, Christopher S Sullivan, Jaquelin P Dudley, and Farah Mustafa. “MMTV does not encode viral microRNAs but alters the levels of cancer-associated host microRNAs.” Virology, 513, Pp. 180-187.
James M Burke, Clovis R Bass, Rodney P Kincaid, Emin T Ulug, and Christopher S Sullivan. “The Murine Polyomavirus MicroRNA Locus Is Required To Promote Viruria during the Acute Phase of Infection.” J Virol, 92, 16.
Rodney P Kincaid, Victor L Lam, Rachel P Chirayil, Glenn Randall, and Christopher S Sullivan. “RNA triphosphatase DUSP11 enables exonuclease XRN-mediated restriction of hepatitis C virus.” Proc Natl Acad Sci U S A, 115, 32, Pp. 8197-8202.
2017
James M Burke and Christopher S Sullivan. “DUSP11 – An RNA phosphatase that regulates host and viral non-coding RNAs in mammalian cells.” RNA Biol, 14, 11, Pp. 1457-1465.
James M Burke, Rodney P Kincaid, Francesca Aloisio, Nicole Welch, and Christopher S Sullivan. “Expression of short hairpin RNAs using the compact architecture of retroviral microRNA genes.” Nucleic Acids Res, 45, 17, Pp. e154.
2016
James M Burke, Rodney P Kincaid, Ryan M Nottingham, Alan M Lambowitz, and Christopher S Sullivan. “DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs.” Genes Dev, 30, 18, Pp. 2076-2092.
Rodney P Kincaid and Christopher S Sullivan. “Lessons Learned from In Vivo Studies of a Viral Noncoding RNA.” mSphere, 1, 2.
Chad V Kuny and Christopher S Sullivan. “Virus-Host Interactions and the ARTD/PARP Family of Enzymes.” PLoS Pathog, 12, 3, Pp. e1005453.
2015
Christopher S. Sullivan. “Viral Virtuosos: New understanding of noncoding RNAs may solve a long-standing puzzleabout how viruses orchestrate lifelong infections..” The Scientist.
Chun Jung Chen, Jennifer E Cox, Kristopher D Azarm, Karen N Wylie, Kevin D Woolard, Patricia A Pesavento, and Christopher S Sullivan. “Identification of a polyomavirus microRNA highly expressed in tumors.” Virology, 476, Pp. 43-53.
James M Burke, Chad V Kuny, Rodney P Kincaid, and Christopher S Sullivan. “Identification, validation, and characterization of noncanonical miRNAs.” Methods, 91, Pp. 57-68.
2014
Jennifer E Cox and Christopher S Sullivan. “Balance and Stealth: The Role of Noncoding RNAs in the Regulation of Virus Gene Expression.” Annu Rev Virol, 1, 1, Pp. 89-109.
James M Burke, Demetra P Kelenis, Rodney P Kincaid, and Christopher S Sullivan. “A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA.” RNA, 20, 7, Pp. 1068-77.
Justin M Pare and Christopher S Sullivan. “Distinct antiviral responses in pluripotent versus differentiated cells.” PLoS Pathog, 10, 2, Pp. e1003865.
Justin M Pare and Christopher S Sullivan. “A host MicroRNA brokers truce with HSV-1.” Cell Host Microbe, 15, 4, Pp. 395-7.
James M Burke, Clovis R Bass, Rodney P Kincaid, and Christopher S Sullivan. “Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP III-generated shRNAs.” Nucleic Acids Res, 42, 22, Pp. 13949-62.
Chun Jung Chen, James M Burke, Rodney P Kincaid, Kristopher D Azarm, Noel Mireles, Janet S Butel, and Christopher S Sullivan. “Naturally arising strains of polyomaviruses with severely attenuated microRNA expression.” J Virol, 88, 21, Pp. 12683-93.
Rodney P Kincaid, Yating Chen, Jennifer E Cox, Axel Rethwilm, and Christopher S Sullivan. “Noncanonical microRNA (miRNA) biogenesis gives rise to retroviral mimics of lymphoproliferative and immunosuppressive host miRNAs.” MBio, 5, 2, Pp. e00074.
Shaojie Zhang, Vojtech Sroller, Preeti Zanwar, Chun Jung Chen, Steven J Halvorson, Nadim J Ajami, Corey W Hecksel, Jody L Swain, Connie Wong, Christopher S Sullivan, and Janet S Butel. “Viral microRNA effects on pathogenesis of polyomavirus SV40 infections in syrian golden hamsters.” PLoS Pathog, 10, 2, Pp. e1003912.
2013
Lydia V McClure, Rodney P Kincaid, James M Burke, Adam Grundhoff, and Christopher S Sullivan. “Comprehensive mapping and analysis of Kaposi’s sarcoma-associated herpesvirus 3′ UTRs identify differential posttranscriptional control of gene expression in lytic versus latent infection.” J Virol, 87, 23, Pp. 12838-49.
Chun Jung Chen, Jennifer E Cox, Rodney P Kincaid, Angel Martinez, and Christopher S Sullivan. “Divergent MicroRNA targetomes of closely related circulating strains of a polyomavirus.” J Virol, 87, 20, Pp. 11135-47.
Gil Ju Seo, Rodney P Kincaid, Teva Phanaksri, James M Burke, Justin M Pare, Jennifer E Cox, Tien-Ying Hsiang, Robert M Krug, and Christopher S Sullivan. “Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells.” Cell Host Microbe, 14, 4, Pp. 435-45.
2012
Peggy I Wang, Sohyun Hwang, Rodney P Kincaid, Christopher S Sullivan, Insuk Lee, and Edward M Marcotte. “RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network.” Genome Biol, 13, 12, Pp. R125.
Rodney P Kincaid, James M Burke, and Christopher S Sullivan. “RNA virus microRNA that mimics a B-cell oncomiR.” PNAS, 109, 8, Pp. 3077-82.
Rodney P Kincaid and Christopher S Sullivan. “Virus-encoded microRNAs: an overview and a look to the future.” PLoS Pathog, 8, 12, Pp. e1003018.
2011
Lydia V McClure, Yao-Tang Lin, and Christopher S Sullivan. “Detection of viral microRNAs by Northern blot analysis.” Methods Mol Biol, 721, Pp. 153-71.
Yao-Tang Lin and Christopher S Sullivan. “Expanding the role of Drosha to the regulation of viral gene expression.” Proc Natl Acad Sci U S A, 108, 27, Pp. 11229-34.
Chun Jung Chen, Rodney P Kincaid, Gil Ju Seo, Mark D Bennett, and Christopher S Sullivan. “Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses.” J Virol, 85, 9, Pp. 4487-500.
Adam Grundhoff and Christopher S Sullivan. “Virus-encoded microRNAs.” Virology, 411, 2, Pp. 325-43.
2010
Alexander Swarbrick, Susan L Woods, Alexander Shaw, Asha Balakrishnan, Yuwei Phua, Akira Nguyen, Yvan Chanthery, Lionel Lim, Lesley J Ashton, Robert L Judson, Noelle Huskey, Robert Blelloch, Michelle Haber, Murray D Norris, Peter Lengyel, Christopher S Hackett, Thomas Preiss, Albert Chetcuti, Christopher S Sullivan, Eric G Marcusson, William Weiss, Noelle L’Etoile, and Andrei Goga. “miR-380-5p represses p53 to control cellular survival and is associated with poor outcome in MYCN amplified neuroblastoma..” Nature Med, 16, Pp. 1134-1140.
S Asgari and Sullivan. C. S. “Role of microRNAs as regulators of host-virus interactions.” “Insect Virology”, S. Asgari and K Johnson, Editors. Horizon Scientific Press. (invited book chapter).
Lydia V McClure, Gil Ju Seo, and Christopher S Sullivan. “Reporter-based assays for analyzing RNA interference in mammalian cells. In Methods in Molecular Biology:.” “Argonaute Proteins: Methods and Protocols”, T. C. Hobman and T. Duchaine, Editors. Humana Press. (invited book chapter).
Yao-Tang Lin, Rodney P Kincaid, Dhivya Arasappan, Scot E Dowd, Scott P Hunicke-Smith, and Christopher S Sullivan. “Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs.” RNA, 16, 8, Pp. 1540-58.
2009
Gil Ju Seo, Chun Jung Chen, and Christopher S Sullivan. “Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression.” Virology, 383, 2, Pp. 183-7.
Christopher S Sullivan, Chang K Sung, Christopher D Pack, Adam Grundhoff, Aron E Lukacher, Thomas L Benjamin, and Don Ganem. “Murine Polyomavirus encodes a microRNA that cleaves early RNA transcripts but is not essential for experimental infection.” Virology, 387, 1, Pp. 157-67.
Joseph M Ziegelbauer, Christopher S Sullivan, and Don Ganem. “Tandem array-based expression screens identify host mRNA targets of virus-encoded microRNAs.” Nat Genet, 41, 1, Pp. 130-4.
2008
Christopher S. Sullivan and Bryan R. Cullen. “Non-coding Regulatory RNAs of the DNA Tumor Viruses.” Edited by B. Damania and J.M. Pipas. Springer Science and Media: New York, Pp. 645-682.
G. J. Seo, L. H. L. Fink, B. O’hara, W. J. Atwood, and C.S. Sullivan. “Evolutionarily Conserved Function of a Viral MicroRNA.” J Viro, 82, 20, Pp. 9823-9828.
Christopher S. Sullivan. “New roles for large and small viral RNAs in evading host defences.” Nature Reviews Genetics , 9, 7, Pp. 503-507.
Lydia V. McClure* and Christopher S. Sullivan*. “Kaposi’s Sarcoma Herpes Virus Taps into a Host MicroRNA Regulatory Network.” Cell&Host Microbe, 3, 1, Pp. 1-3.
2007
Christopher S. Sullivan*. “High Conservation of Kaposi Sarcoma—Associated Herpesvirus MicroRNAs Implies Important Function.” The Journal of Infectious Diseases, 195, 5, Pp. 618-620.
Christopher S. Sullivan* and Adam Grundhoff. “Identification of Viral MicroRNAs.” Method of Enzymology, 427, Pp. 3-23.
2006
A. T. Grundoff*, C. S. Sullivan*, and Ganem D. “A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses.” RNA, 12, Pp. 733–750.
2005
C.S. Sullivan and D. Ganem. “MicroRNAs and Viral infection.” Molecular Cell, 20, Pp. 3-7.
Christopher S Sullivan, Adam T Grundhoff, Satvir Tevethia, James M Pipas, and Don Ganem. “SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells.” Nature, 435, 7042, Pp. 682-6.
C. S. Sullivan* and D. Ganem. “A virus-encoded inhibitor that blocks RNA interference in Mammalian cells.” J. Virol, 79, Pp. 7371–7379.