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Biodiversity Collections (Texas Natural History Collections),
building LSF/PRC176 (campus mail R4000), 10100 Burnet Rd.
Austin, TX 78758-4445

Uncategorized

December 12, 2024, Filed Under: Uncategorized

Waller Creek UT Green Fees grant

August 26, 2015

For the next year Hendrickson, Dr. Mary Poteet in Jackson School of Geosciences, and Adam Cohen, Fish Collection Manager, ans several students to be hired soon, will be working to establish a UT-wide working group on Waller Creek, focused on its biodiversity and sustainability.

See also: Fish Collection

December 12, 2024, Filed Under: Uncategorized

citizen-science

16 eels retrieved below WWTP in Port Lavaca

February 19, 2018

Last week a City of Port Lavaca employee contacted us after finding information about our eel project online. He had found a bunch of eels in an effluent box in the discharge channel of the city’s Wastewater Treatment plant. Our project collaborator Stephen Curtis, from TPWD’s 
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Barton Springs University

October 5, 2016

We recently attended the Barton Springs University event at Zilker Park, hosted by the Save Our Springs alliance.  Dean Hendrickson presented a talk about Eels – “The Whole Truth About the Weirdest Fish in Town”.  We also hosted a table with information on the fish diversity found within Barton Creek (flyer with fishes from the creek below) and how anyone can contribute to providing

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December 12, 2024, Filed Under: Uncategorized

biodiversity

Barstow Speaker Series Talk: Fishes of Texas and the Colorado River, with Special Attention to American Eel

March 20, 2018

On March 5, 2018 the Colorado River Alliance held their Barstow Speaker Series program in which Dean Hendrickson was asked to speak on the topic “Of Eels & Oysters: The Amazing Ecosystems of the Colorado River and Matagorda Bay”.  Dean’s talk oultined the scope of the Fishes of Texas
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16 eels retrieved below WWTP in Port Lavaca

February 19, 2018

Last week a City of Port Lavaca employee contacted us after finding information about our eel project online. He had found a bunch of eels in an effluent box in the discharge channel of the city’s Wastewater Treatment plant. Our project collaborator Stephen Curtis, from TPWD’s 
Read more

Barton Springs University

October 5, 2016

We recently attended the Barton Springs University event at Zilker Park, hosted by the Save Our Springs alliance.  Dean Hendrickson presented a talk about Eels – “The Whole Truth About the Weirdest Fish in Town”.  We also hosted a table with information on the fish diversity found within Barton Creek (flyer with fishes from the creek below) and how anyone can contribute to providing

December 12, 2024, Filed Under: Uncategorized

Conservation

Barton Springs University

October 5, 2016

We recently attended the Barton Springs University event at Zilker Park, hosted by the Save Our Springs alliance.  Dean Hendrickson presented a talk about Eels – “The Whole Truth About the Weirdest Fish in Town”.  We also hosted a table with information on the fish diversity found within Barton Creek (flyer with fishes from the creek below) and how anyone can contribute to providing

Read more

Dr. Gary Garrett awarded Distinguished Texas Scientist honor by the Texas Academy of Science

March 11, 2016

This past weekend, members of our team attended the 119th Annual Texas Academy of Science Meeting in Junction, where our own Dr. Gary Garrett was selected for the Distinguished Texas Scientist Award. Recipients are chosen by the Academy’s Board of Directors for work that demonstrates “distinguished contributions to science through research and publication that has garnered recognition at the national and international level.” Gary began his career at the University of Texas
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December 11, 2024, Filed Under: Uncategorized

Chihuahua Catfish

This project has a very long history, beginning with work decades ago by eminent ichthyologist Robert R. Miller and his graduate student, Julian Humphries. They made substantive progress toward publishing a description of this still undescribed species from northern México, Texas and New Mexico. Dean was a peripheral player in that work way back in his grad student days, helping to provide specimens, etc.,  and because this species obviously had much in common with its a close relative, the Yaqui Catfish (another of Dean’s old projects that has also seen a resurgance of activity in recent years). Julian’s and Bob’s work in the 1990s, though never published, was well enough known in the conservation world that this undescribed species found its way into the conservation literature, and eventually showed up on the US Fish and Wildlife Service’s list of species that are candidates for listing as endangered. That then increased at least political interest in it and potentially opened some funding doors for conservation management.

The obvious first requirement for any consensus about conservation need, though, is taxonomic certainty that the candidate is indeed a species eligible for listing. So, we’re now involved in trying to follow up on Humphrie’s and Miller’s earlier work to determine if this is indeed a valid species and, if so, formally publish a description of it. At the same time, we’re working to update information about its conservation status. Neither task is as simple as it may sound, even though we have copies of near final description manuscripts produced by Julian Humphries (doctoral student) and Miller in the 1990s and early 2000s. As they recognized, the species is clearly rare in the U.S., where it occurred naturally only in the Río Grande basin,  where they believed it likely extirpated, and, as they noted, it appears to hybridize with a couple of other catfish species (both native and introduced), which greatly complicates morphological analyses. Since most specimens were collected many years ago when standard practice was preservation in formalin, DNA that could help factor out the morphological noise attributed to hybridization, is not available from the specimens they studied. Perhaps relevant research will be facilitated by the November 2019 notice to file suit against the U.S. that was filed by the Center for Biological Diversity for failure to decide whether Chihuahua Catfish (and many other species) should be federally protected. 

So, we’re starting to pick up this project. It’s slow going, but we’re making some progress. The limited DNA we’ve obtained from newer specimens from both the Gila River in New Mexico and from near the location of the type locality in Julian’s and Bob’s manuscript, are closely related to the Headwater Catfish, with those from Chihuahua being slightly (2% divergent) from it. The genetics also support the hybridization hypotheses. Genetic ananalyses will clearly be key to resolving this long-standing mystery and clarifying the conservation status of both this species and Headwater Catfish. Dean presented an overview of this work (opens in new tab) at the 2017 Desert Fishes Council meeting in San Luis Río Colorado, Sonora, México, but we’re still looking for funding to help get us further down the path toward solving this mystery. Meanwhile, little has happened to clarify the taxonomic staus of the still un-named form\. Miller and Humphries did not attempt genetic analyses, but recently, Alejandro Varela and colleagues analyzed tissues of specimens collected from near where Miller and Humphries collected what were destined to become the holotype and a large series of paratypes in the Río Nonoava of the Conchos basin. Their results, indicating it to be sister to Ictalurus lupus, were most recently summarized in a book chapter (Varela Romero, A., Ballesteros-Cordova, C. A., Ruiz-Campos, G., Sánchez González, S., & Brooks, J. E. (2020). Discoveries and Conservation of Catfishes in México. In D. Propst, J. Williams, K. Bestgen, & C. Hoagstrom (Eds.), Standing between Life and Extinction (Varela-Romero_etal_2020_RecentDiscoveries&Conservation-Ictalurus-Mexico_Chp19-StandingBetweenLife&Extinction.pdf; pp. 285–293). Desert Fishes Council, University of Chicago Press. https://chicago.universitypressscholarship.com/view/10.7208/chicago/9780226694504.001.0001/upso-9780226694337). Humphries and Miller noted considerable morhpological evidence of hybridization, and It seems likely that this species has a history of hybridization very much like that of the Yaqui Catfish (Ictalurus pricei), and if so, it’s likely that the introgression has been going on for even longer than it has with Yaqui Catfish, which didn’t start hybridizing with I. punctatus until humans introduced that species to the Yaqui sometime in the latter half of the 20th century. 

December 2, 2024, Filed Under: 2011, Uncategorized

Coupling stable isotope studies with food web manipulations to predict the effects of exotic fish: lessons from Cuatro Ciénegas, Mexico

Citation:

Marks, Jane C., Christopher Williamson, and Dean A. Hendrickson. “Coupling stable isotope studies with food web manipulations to predict the effects of exotic fish: lessons from Cuatro Ciénegas, Mexico.” Aquatic Conservation: Marine and Freshwater Ecosystems 21 (4): 317–323.

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November 24, 2024, Filed Under: 1983, Uncategorized

Factors resulting in decline of the endangered Sonoran topminnow Poeciliopsis occidentalis (Atheriniformes: Poeciliidae) in the United States

Citation:

Meffe, G.K., Dean A. Hendrickson, W.L. Minckley, and J.N. Rinne. “Factors resulting in decline of the endangered Sonoran topminnow Poeciliopsis occidentalis (Atheriniformes: Poeciliidae) in the United States.” Biological Conservation 25 (2): 135–159.

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November 24, 2024, Filed Under: 1979, Uncategorized

Additional records for the Pacific Gizzard Shad, Dorsoma smithi (Clupeidae), from Sonora, Mexico

Citation:

Minckley, W.L., Dean A. Hendrickson, and D.J. Siebert. “Additional records for the Pacific Gizzard Shad, Dorsoma smithi (Clupeidae), from Sonora, Mexico.” Southwestern Naturalist 24(4): 683–714.

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November 19, 2024, Filed Under: Uncategorized

Ecology and value of collections

Turner, Thomas, Henry L. Bart Jr., Frank McCormick, Alexi Besser, Rachel Bowes, Krista D. Capps, Emily DeArmon, et al. “Long-Term Ecological Research in Freshwaters Enabled by Regional Biodiversity Collections, Stable Isotope Analysis, and Environmental Informatics.” Bioscience.

Abstract

Biodiversity collections are experiencing a renaissance fueled by the intersection of informatics, emerging technologies, and the extended use and interpretation of specimens and archived databases. This paper explores the potential for transformative research in ecology integrating biodiversity collections, stable isotope analysis (SIA), and environmental informatics. Like genomic DNA, SIA provides a common ‘currency’ interpreted in the context of biogeochemical principles. Integration of SIA data across collections allows for evaluation of long-term ecological change at continent-wide scales. Challenges, including analysis of sparse samples, lack of isotopic baselines, and effects of preservation remain but none are insurmountable. The general research framework proposed here interfaces with databases and observatories, such as the National Ecological Observatory Network (NEON), to provide baselines for retrospective studies and ecological forecasting. Collections and SIA add historical context to fundamental questions in freshwater ecological research, baselines for ecosystem monitoring, and a means of quantitative assessment for ecosystem restoration.

November 13, 2024, Filed Under: Publications by Year, Uncategorized

Publications by Year: 2022

2022

Hendrickson, Dean A. “Testing An Alternative Shelving Arrangement to Optimize Space and Task Efficiency in a Fluid Fish Collection.” Edinburgh, Scotland, UK. Publisher’s Version

Abstract

For centuries, a taxonomic and alphabetic arrangement (TAA) of objects on shelves prevailed in fluid-preserved natural history collections while they were managed mostly by scientists for their own or vistors’ on-site research using physical specimens. However, most modern collections are now databased and internet-accessible, facilitating diverse forms of research accomplished remotely and decreasing the frequency of need for physical access to specimens, yet the way specimens are shelved and accessed remains nearly universally unchanged. With our fish collection struggling with both severe space limitation and unprecedented rapid growth supporting externally funded research that requires rapid specimen processing and data publication, we started shelving in an object (jar) and catalog number-based arrangement (OCA). To make that possible in our limited and near-full space, without altering our physical shelves in any way, we eliminated all between-jar spaces in our collection, including the customary space between taxa, while keeping it in its original TAA-based order (thus eliminating TAA-based growth capacity. In the resultant empty shelf space, we implemented an OCA shelving system for all newly cataloged jars. Once the OCA contained a relatively large number of jars, we carried out pragmatic, TAA-OCA comparisons. Volumetric jar storage capacity in the OCA is 17% \textgreater TAA, and adjusting the OCA’s vertical shelf spacing to optimizefor each of our 3 jar sizes (impossible in the TAA), could increase that to 115% \textgreater TAA. Ten of 15 routine staff tasks were more efficiently accomplished in the OCA than in the TAA, and the OCA greatly decreases shelving errors (misplacement). We discuss ways to improve efficiency in the OCA for the 5 tasks on which the TAA out-performed it, and report ancillary, unanticipated benefits, such as a way to much more efficiently and quickly monitor fluid levels across all jars. All newly cataloged specimen jarscontinue going into our OCA, and we have significantly postponed hitting the point of absolutely being unable to continue growing. We are hopeful that eventually, a move to a new space will enable conversion of the entire collection from TAA to a more fully-optimized OCA.

Hendrickson, Dean A., John Lundberg, Kyle Luckenbill, and Mariangeles Arce-H. “Update on taxonomic & conservation status of North American blindcats (Ictaluridae)”. Publisher’s Version

Abstract

We provide an updated overview of the taxonomic and conservation status of all North American blind Ictalurids, and continuing efforts to better understand them. In Texas’ deep Edwards Aquifer under San Antonio, Satan eurystomus (Widemouth Blindcat) has not been collected since 1984, but fragments of Trogloglanis pattersoni (Toothless Blindcat) continue to appear occasionally from the only well still consistently available for sampling, providing material for its recently published complete mitogenome. A metabarcoding-based eDNA sampling project hoping to detect blindcats (and other taxa) is now in early testing in wells throughout the San Antonio area. Lack of access to wells remains a major roadblock for that effort, but we have promising outreach efforts developing that we hope will open doors for sampling in the near future. In the adjacent transboundary Edwards-Trinity Aquifer, new localities have been found for Prietella phreatophila (Mexican Blindcat) in both Coahuila and Texas, and a captive colony at San Antonio Zoo continues to thrive and grow. Two complete mitochondrial genomes from 2 specimens of this species using different methodologies are now available. We present new CT data that indicate specimens from a cave \textasciitilde25 km N of the type locality of Prietella lundbergi (Phantom Blindcat) in Tamaulipas, México, initially reported as that species, represent an undescribed taxon. Multiple attempts by divers to obtain additional specimens of P. lundbergi from the type locality have failed, leaving the formalin-preserved holotype as the only specimen of that species.

Pease, Allison A., Krista D. Capps, Dean A. Hendrickson, Manuel Mendoza-Carranza, Rocío Rodiles-Hernández, Colton Avila, and Topiltzin Contreras-MacBeath. “Rivers of Mexico.” Rivers of North America, edited by M.D. DeLong, T.D. Jardine, Arthur C. Benke, and C. E. Cushing, 2nd ed. Boston, Massachusetts: Academis Press.

Abstract

Mexico is a country of exceptional physiographic diversity, and the heterogeneity of surface- water resources in the country is remarkable. Some of the wettest (e.g., the Lacandón Forest in Chiapas) and driest (e.g., the deserts of Sonora) places on the North American continent are in Mexico. Mexico is also home to a great diversity of indigenous cultures, many of which have long and complex relationships with rivers and streams. In this chapter, we describe eight rivers: Río Fuerte, Río Salado, Río Nazas-Aguanaval, Río Tamesí, Río Balsas, Río De la Sierra, Río Lacantún, and Río Hondo. The basins we selected are distributed throughout the country and have diverse drainage patterns; some are endorheic, and others drain into the Pacific Ocean, the Gulf of Mexico, or the Caribbean Sea.

Pease, Allison A., Krista D. Capps, Dean A. Hendrickson, Manuel Mendoza-Carranza, Rocío Rodiles-Hernández, Colton Avila, and Topiltzin Contreras-MacBeath. “Pease, A.A., K.A. Capps, M.M. Castillo, D.A. Hendrickson, M.M. Mendoza-Carranza, R.R. Rodiles-Hernández, C. Avila, and T. Contreras-MacBeath. In press. Rivers of Mexico. In M.D. Delong, T.D. Jardine, A.C. Benke, and C.E. Cushing, editors. Rivers of North.” Rivers of North America, edited by M.D. DeLong, T.D. Jardine, Arthur C. Benke, and C. E. Cushing, 2nd ed. Boston, Massachusetts: Academis Press.

Abstract

Mexico is a country of exceptional physiographic diversity, and the heterogeneity of surface- water resources in the country is remarkable. Some of the wettest (e.g., the Lacandón Forest in Chiapas) and driest (e.g., the deserts of Sonora) places on the North American continent are in Mexico. Mexico is also home to a great diversity of indigenous cultures, many of which have long and complex relationships with rivers and streams. In this chapter, we describe eight rivers: Río Fuerte, Río Salado, Río Nazas-Aguanaval, Río Tamesí, Río Balsas, Río De la Sierra, Río Lacantún, and Río Hondo. The basins we selected are distributed throughout the country and have diverse drainage patterns; some are endorheic, and others drain into the Pacific Ocean, the Gulf of Mexico, or the Caribbean Sea.

Middleton, Barry R, Laura M Norman, Dean A Hendrickson, and Thomas A Minckley. “Spatial Database of Known and Potential Ciénegas in the Greater Madrean Archipelago Ecoregion: U.S..” U.S. Geological Survey. Publisher’s Version

Abstract

This dataset provides location information and some limited attributes of known and potential ciénegas in the Madrean Archipelago ecoregion and closely surrounding area. This was created using point data and information provided by Dean Hendrickson and Thomas Minckley, combined with potential locations derived from analysis of classified raster land cover images and other specialized datasets. Ciénegas, as defined here, are wetlands in arid and semi-arid regions associated with groundwater or lotic components that ideally result in perennial waters on temporal scales of decades to centuries. Ciénegas are typically located at elevations ranging from 0 to 2000m. Ciénegas are typified by significant differences in flora and fauna relative to the greater terrestrial conditions in the region in which they are located. Ciénegas are freshwater to brackish North American wetlands associated with fluvial systems of arid/semi-arid areas of the southwestern U.S. and northwestern Mexico. Once extensively utilized by the region’s indigenous human cultures, as well as early European explorers and settlers, the extent of these aquatic riparian communities has dramatically decreased from historic conditions. These communities are now considered imperiled in North America. The data were collected to provide an up-to-date inventory of ciénegas, along with the locations of potential ciénegas, in the Madrean Archipelago ecoregion (and surrounding 15km buffer) in the US and Mexico. This database is meant to bring attention to ciénegas and ultimately prompt more research and restoration activities on these rare and vulnerable ecosystems. The point data are not meant to provide the precise location, but rather depict a general location. The locations of potential ciénegas were calculated as the centroid of the associated, classified raster image pixels or vector polygons. These points would, therefore, not be ideal as target information for a supervised classification of remotely sensed data. This dataset, however, is useful for locating ciénegas for further research, analysis, management and restoration. Additionally, this census of known and potential ciénegas provides a regional geospatial overview of this important ecosystem that few resources can match. In the near future, moreover, we are intending to perform a landscape change analysis focused on ciénegas of the greater Madrean Archipelago ecoregion.

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