January 2, 2025, Filed Under: 2005, PublicationsIdentifying natural substrates for chaperonins using a sequence-based approach. Citation: Stan, G. ; Brooks, B. R. ; Lorimer, G. H. ; Thirumalai, D. Identifying natural substrates for chaperonins using a sequence-based approach. Protein Sci 14, 193-201. Download identifying-natural-substrates-for-chaperonins-using-a-sequence-based-approach.pdf194 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsProbing the initial stage of aggregation of the Abeta(10-35)-protein: assessing the propensity for peptide dimerization. Citation: Tarus, B. ; Straub, J. E. ; Thirumalai, D. Probing the initial stage of aggregation of the Abeta(10-35)-protein: assessing the propensity for peptide dimerization. J Mol Biol 345, 1141-56. Download Citation probing-the-initial-stage-of-aggregation-of-the-abeta10-35-protein-assessing-the-propensity-for-peptide-dimerization.pdf2.03 MB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsDynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds. Citation: Barsegov, V. ; Thirumalai, D. Dynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds. Proc Natl Acad Sci U S A 102, 1835-9. Download Citation dynamics-of-unbinding-of-cell-adhesion-molecules-transition-from-catch-to-slip-bonds.pdf358 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsExtracting stacking interaction parameters for RNA from the data set of native structures. Citation: Dima, R. I. ; Hyeon, C. ; Thirumalai, D. Extracting stacking interaction parameters for RNA from the data set of native structures. J Mol Biol 347, 53-69. Download Citation extracting-stacking-interaction-parameters-for-rna-from-the-data-set-of-native-structures.pdf796 KB Last updated on 08/18/2017 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsMechanical unfolding of RNA hairpins. Citation: Hyeon, C. ; Thirumalai, D. Mechanical unfolding of RNA hairpins. Proc Natl Acad Sci U S A 102, 6789-94. Download Citation mechanical-unfolding-of-rna-hairpins.pdf650 KB Last updated on 08/18/2017 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsMolecular crowding enhances native state stability and refolding rates of globular proteins. Citation: Cheung, M. S. ; Klimov, D. ; Thirumalai, D. Molecular crowding enhances native state stability and refolding rates of globular proteins. Proc Natl Acad Sci U S A 102, 4753-8. Download molecular-crowding-enhances-native-state-stability-and-refolding-rates-of-globular-proteins.pdf597 KB Last updated on 08/18/2017 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsNetwork of dynamically important residues in the open/closed transition in polymerases is strongly conserved. Citation: Zheng, W. ; Brooks, B. R. ; Doniach, S. ; Thirumalai, D. Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved. Structure 13, 565-77. Download network-of-dynamically-important-residues-in-the-open-closed-transition-in-polymerases-is-strongly-conserved.pdf704 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsA novel colorimetric and fluorescent chemosensor for anions involving PET and ICT pathways. Citation: Thiagarajan, V. ; Ramamurthy, P. ; Thirumalai, D. ; Ramakrishnan, V. T. A novel colorimetric and fluorescent chemosensor for anions involving PET and ICT pathways. Org Lett 7 657-60. Download a-novel-colorimetric-and-fluorescent-chemosensor-for-anions-involving-pet-and-ict-pathways.pdf196 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsProbing the “annealing” mechanism of GroEL minichaperone using molecular dynamics simulations. Citation: Stan, G. ; Brooks, B. R. ; Thirumalai, D. Probing the “annealing” mechanism of GroEL minichaperone using molecular dynamics simulations. J Mol Biol 350, 817-29. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsRNA and protein folding: common themes and variations. Citation: Thirumalai, D. ; Hyeon, C. RNA and protein folding: common themes and variations. Biochemistry 44, 4957-70. Download rna-and-protein-folding-common-themes-and-variations.pdf631 KB Last updated on 08/18/2017 PubMed DOI
