January 2, 2025, Filed Under: 2005, PublicationsRNA tertiary interactions mediate native collapse of a bacterial group I ribozyme. Citation: Chauhan, S. ; Caliskan, G. ; Briber, R. M. ; Perez-Salas, U. ; Rangan, P. ; Thirumalai, D. ; Woodson, S. A. RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme. J Mol Biol 353, 1199-209. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsThe shape of a flexible polymer in a cylindrical pore. Citation: Morrison, G. ; Thirumalai, D. The shape of a flexible polymer in a cylindrical pore. J Chem Phys 122, 194907. Download the-shape-of-a-flexible-polymer-in-a-cylindrical-pore.pdf125 KB Last updated on 01/03/2018 PubMed
January 2, 2025, Filed Under: 2005, PublicationsHOPE: a homotopy optimization method for protein structure prediction. Citation: Dunlavy, D. M. ; O’Leary, D. P. ; Klimov, D. ; Thirumalai, D. HOPE: a homotopy optimization method for protein structure prediction. J Comput Biol 12, 1275-88. Download hope-a-homotopy-optimization-method-for-protein-structure-prediction.pdf129 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsProbing protein-protein interactions by dynamic force correlation spectroscopy. Citation: Barsegov, V. ; Thirumalai, D. Probing protein-protein interactions by dynamic force correlation spectroscopy. Phys Rev Lett 95, 168302. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsRibosome exit tunnel can entropically stabilize alpha-helices. Citation: Ziv, G. ; Haran, G. ; Thirumalai, D. Ribosome exit tunnel can entropically stabilize alpha-helices. Proc Natl Acad Sci U S A 102, 18956-61. Download ribosome-exit-tunnel-can-entropically-stabilize-alpha-helices.pdf360 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsSymmetric connectivity of secondary structure elements enhances the diversity of folding pathways. Citation: Klimov, D. K. ; Thirumalai, D. Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways. J Mol Biol 353, 1171-86. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsInfluence of surface interactions on folding and forced unbinding of semiflexible chains. Citation: Barsegov, V. ; Thirumalai, D. Influence of surface interactions on folding and forced unbinding of semiflexible chains. J Phys Chem B 109, 21979-88. Download influence_of_surface_interactions_on_folding_and_forced_unbinding_of_semiflexible_chains.pdf613 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsPersistence length changes dramatically as RNA folds. Citation: Caliskan, G. ; Hyeon, C. ; Perez-Salas, U. ; Briber, R. M. ; Woodson, S. A. ; Thirumalai, D. Persistence length changes dramatically as RNA folds. Phys Rev Lett 95, 268303. Download persistence-length-changes-dramatically-as-rna-folds.pdf221 KB Last updated on 01/03/2018 PubMed DOI
