Citation:
Pincus, D. L. ; Thirumalai, D. Crowding effects on the mechanical stability and unfolding pathways of ubiquitin. J Phys Chem B 113, 359-68.
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2009
Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
Citation:
Tehver, R. ; Chen, J. ; Thirumalai, D. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle. J Mol Biol 387, 390-406.
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Last updated on 08/18/2017
Collapse transition in proteins.
Citation:
Ziv, G. ; Thirumalai, D. ; Haran, G. Collapse transition in proteins. Phys Chem Chem Phys 11, 83-93.
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Last updated on 08/18/2017
Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II.
Citation:
Zheng, W. ; Thirumalai, D. Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II. Biophys J 96, 2128-37.
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How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?
Citation:
O’Brien, E. P. ; Morrison, G. ; Brooks, B. R. ; Thirumalai, D. How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?. J Chem Phys 130, 124903.
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Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Abeta peptides with implications for rates of fibril formation.
Citation:
Reddy, G. ; Straub, J. E. ; Thirumalai, D. Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Abeta peptides with implications for rates of fibril formation. J Phys Chem B 113, 1162-72.
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Semiflexible chains in confined spaces.
Citation:
Morrison, G. ; Thirumalai, D. Semiflexible chains in confined spaces. Phys Rev E Stat Nonlin Soft Matter Phys 79, 011924.
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Transmembrane structures of amyloid precursor protein dimer predicted by replica-exchange molecular dynamics simulations.
Citation:
Miyashita, N. ; Straub, J. E. ; Thirumalai, D. ; Sugita, Y. Transmembrane structures of amyloid precursor protein dimer predicted by replica-exchange molecular dynamics simulations. J Am Chem Soc 131, 3438-9.
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Last updated on 08/18/2017
Water-mediated interactions between hydrophobic and ionic species in cylindrical nanopores.
Citation:
Vaitheeswaran, S. ; Reddy, G. ; Thirumalai, D. Water-mediated interactions between hydrophobic and ionic species in cylindrical nanopores. J Chem Phys 130, 094502.
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Last updated on 08/18/2017
On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: illustrations using lattice model.
Citation:
Liu, Z. ; Chen, J. ; Thirumalai, D. On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: illustrations using lattice model. Proteins 77, 823-31.
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Last updated on 08/18/2017
