Citation:
Zheng, W. ; Brooks, B. R. ; Thirumalai, D. Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks. Curr Protein Pept Sci 10, 128-32.
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2009
Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures.
Citation:
Cho, S. S. ; Pincus, D. L. ; Thirumalai, D. Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures. Proc Natl Acad Sci U S A 106, 17349-54.
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Last updated on 08/18/2017
Crowding effects on the structural transitions in a flexible helical homopolymer.
Citation:
Kudlay, A. ; Cheung, M. S. ; Thirumalai, D. Crowding effects on the structural transitions in a flexible helical homopolymer. Phys Rev Lett 102, 118101.
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Last updated on 08/18/2017
Dynamics of locking of peptides onto growing amyloid fibrils.
Citation:
Reddy, G. ; Straub, J. E. ; Thirumalai, D. Dynamics of locking of peptides onto growing amyloid fibrils. Proc Natl Acad Sci U S A 106, 11948-53.
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Last updated on 08/18/2017
Dynamics of tRNA at different levels of hydration.
Citation:
Roh, J. H. ; Briber, R. M. ; Damjanovic, A. ; Thirumalai, D. ; Woodson, S. A. ; Sokolov, A. P. Dynamics of tRNA at different levels of hydration. Biophys J 96, 2755-62.
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Last updated on 08/18/2017
Metal ion dependence of cooperative collapse transitions in RNA.
Citation:
Moghaddam, S. ; Caliskan, G. ; Chauhan, S. ; Hyeon, C. ; Briber, R. M. ; Thirumalai, D. ; Woodson, S. A. Metal ion dependence of cooperative collapse transitions in RNA. J Mol Biol 393, 753-64.
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Last updated on 08/18/2017
Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide.
Citation:
Rivera, E. ; Straub, J. ; Thirumalai, D. Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide. Biophys J 96, 4552-60.
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Last updated on 08/18/2017
Refolding dynamics of stretched biopolymers upon force quench.
Citation:
Hyeon, C. ; Morrison, G. ; Pincus, D. L. ; Thirumalai, D. Refolding dynamics of stretched biopolymers upon force quench. Proc Natl Acad Sci U S A 106, 20288-93.
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Last updated on 08/18/2017
Structures of beta-amyloid peptide 1-40, 1-42, and 1-55-the 672-726 fragment of APP-in a membrane environment with implications for interactions with gamma-secretase.
Thermodynamic perspective on the dock-lock growth mechanism of amyloid fibrils.
Citation:
O’Brien, E. P. ; Okamoto, Y. ; Straub, J. E. ; Brooks, B. R. ; Thirumalai, D. Thermodynamic perspective on the dock-lock growth mechanism of amyloid fibrils. J Phys Chem B 113, 14421-30.
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Last updated on 08/18/2017
