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2015

January 5, 2025, Filed Under: 2015

48 Design principles governing the motility of myosin motors.

Citation:

Thirumalai, D. 48 Design principles governing the motility of myosin motors. J Biomol Struct Dyn 33 Suppl 1, 33.

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48-design-principles-governing-the-motility-of-myosin-motors.pdf359 KB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Confinement-Induced Glassy Dynamics in a Model for Chromosome Organization.

Citation:

Kang, H. ; Yoon, Y. – G. ; Thirumalai, D. ; Hyeon, C. Confinement-Induced Glassy Dynamics in a Model for Chromosome Organization. Phys Rev Lett 115, 198102.

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confinement-induced-glassy-dynamics-in-a-model-for-chromosome-organization.pdf737 KB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Dissecting Ubiquitin Folding Using the Self-Organized Polymer Model.

Citation:

Reddy, G. ; Thirumalai, D. Dissecting Ubiquitin Folding Using the Self-Organized Polymer Model. J Phys Chem B 119, 11358-70.

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dissecting-ubiquitin-folding-using-the-self-organized-polymer-model.pdf3.3 MB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Helicase processivity and not the unwinding velocity exhibits universal increase with force.

Citation:

Pincus, D. L. ; Chakrabarti, S. ; Thirumalai, D. Helicase processivity and not the unwinding velocity exhibits universal increase with force. Biophys J 109, 220-30.

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helicase-processivity-and-not-the-unwinding-velocity-exhibits-universal-increase-with-force.pdf1.51 MB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Unexpected Swelling of Stiff DNA in a Polydisperse Crowded Environment.

Citation:

Kang, H. ; Toan, N. M. ; Hyeon, C. ; Thirumalai, D. Unexpected Swelling of Stiff DNA in a Polydisperse Crowded Environment. J Am Chem Soc 137, 10970-8.

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unexpected-swelling-of-stiff-dna-in-a-polydisperse-crowded-environment.pdf3.11 MB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches.

Citation:

Lin, J. – C. ; Yoon, J. ; Hyeon, C. ; Thirumalai, D. Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches. Methods Enzymol 553, 235-58.

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using_simulations_and_kinetic_network_models_to_reveal_the_dynamics_and_functions_of_riboswitches.pdf1.89 MB

Last updated on 08/17/2017

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January 5, 2025, Filed Under: 2015

Effects of macromolecular crowding on the collapse of biopolymers.

Citation:

Kang, H. ; Pincus, P. A. ; Hyeon, C. ; Thirumalai, D. Effects of macromolecular crowding on the collapse of biopolymers. Phys Rev Lett 114, 068303.

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334-effects_of_macromolecular_crowding_on_the_collapse_of_biopolymers.pdf374 KB

Last updated on 08/15/2016

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January 5, 2025, Filed Under: 2015

Protein folding guides disulfide bond formation

Citation:

Qin, M. ; Wang, W. ; Thirumalai, D. Protein folding guides disulfide bond formation. Proc. Natl. Acad. Sci. USA 112, 11241-11246.

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protein-folding-guides-disulfide-bond-formation.pdf1.28 MB

Last updated on 08/17/2017

January 5, 2025, Filed Under: 2015

How do metal ions direct ribozyme folding?

Citation:

Denesyuk, N. A. ; Thirumalai, D. How do metal ions direct ribozyme folding?. Nature Chem. 7 793–801.

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how-do-metal-ions-direct-ribozyme-folding.pdf4.91 MB

Last updated on 08/17/2017

January 5, 2025, Filed Under: 2015

Using Simulations and Kinetic Network Models to Reveal the Dynamics and Functions of Riboswitches

Citation:

Lin, J. C. ; Yoon, J. ; Hyeon, C. ; Thirumalai, D. Using Simulations and Kinetic Network Models to Reveal the Dynamics and Functions of Riboswitches. In Methods in Enzymology; Academic Press; Vol. 553, pp. 235-258.

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lin_me_2015.pdf1.89 MB

Last updated on 07/27/2016

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