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Publications

January 2, 2025, Filed Under: 2001, Publications

Chaperonin-mediated protein folding.

Citation:

Thirumalai, D. ; Lorimer, G. H. Chaperonin-mediated protein folding. Annu Rev Biophys Biomol Struct 30, 245-69.

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chaperonin-mediated-protein-folding.pdf273 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2001, Publications

Early events in RNA folding.

Citation:

Thirumalai, D. ; Lee, N. ; Woodson, S. A. ; Klimov, D. Early events in RNA folding. Annu Rev Phys Chem 52, 751-62.

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early-events-in-rna-folding.pdf355 KB

Last updated on 08/18/2017

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January 2, 2025, Filed Under: 2001, Publications

Multiple protein folding nuclei and the transition state ensemble in two-state proteins.

Citation:

Klimov, D. K. ; Thirumalai, D. Multiple protein folding nuclei and the transition state ensemble in two-state proteins. Proteins 43, 465-75.

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January 2, 2025, Filed Under: 2001, Publications

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics.

Citation:

Heilman-Miller, S. L. ; Pan, J. ; Thirumalai, D. ; Woodson, S. A. Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics. J Mol Biol 309, 57-68.

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role-of-counterion-condensation-in-folding-of-the-tetrahymena-ribozyme-ii-counterion-dependence-of-folding-kinetics.pdf305 KB

Last updated on 08/18/2017

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January 2, 2025, Filed Under: 2000, Publications

Maximizing RNA folding rates: a balancing act.

Citation:

Thirumalai, D. ; Woodson, S. A. Maximizing RNA folding rates: a balancing act. RNA 6 790-4.

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maximizing-rna-folding-rates-a-balancing-act.pdf182 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2000, Publications

Mechanisms and kinetics of beta-hairpin formation.

Citation:

Klimov, D. K. ; Thirumalai, D. Mechanisms and kinetics of beta-hairpin formation. Proc Natl Acad Sci U S A 97, 2544-9.

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mechanisms-and-kinetics-of-beta-hairpin-formation.pdf373 KB

Last updated on 08/18/2017

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January 2, 2025, Filed Under: 2000, Publications

Native topology determines force-induced unfolding pathways in globular proteins.

Citation:

Klimov, D. K. ; Thirumalai, D. Native topology determines force-induced unfolding pathways in globular proteins. Proc Natl Acad Sci U S A 97, 7254-9.

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native-topology-determines-force-induced-unfolding-pathways-in-globular-proteins.pdf348 KB

Last updated on 08/18/2017

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January 2, 2025, Filed Under: 1999, Publications

Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models.

Citation:

Thirumalai, D. ; Klimov, D. K. Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models. Curr Opin Struct Biol 9 197-207.

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deciphering-the-timescales-and-mechanisms-of-protein-folding-using-minimal-off-lattice-models.pdf1.38 MB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 1999, Publications

Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity.

Citation:

Betancourt, M. R. ; Thirumalai, D. Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity. J Mol Biol 287, 627-44.

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exploring-the-kinetic-requirements-for-enhancement-of-protein-folding-rates-in-the-groel-cavity.pdf572 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 1999, Publications

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics.

Citation:

Pan, J. ; Thirumalai, D. ; Woodson, S. A. Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics. Proc Natl Acad Sci U S A 96, 6149-54.

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magnesium-dependent-folding-of-self-splicing-rna-exploring-the-link-between-cooperativity-thermodynamics-and-kinetics.pdf217 KB

Last updated on 01/03/2018

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