January 2, 2025, Filed Under: 1999, PublicationsPair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes. Citation: Betancourt, M. R. ; Thirumalai, D. Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes. Protein Sci 8 361-9. Download Citation pair-potentials-for-protein-folding-choice-of-reference-states-and-sensitivity-of_predicted-motive-states-to-variations-in-the-interaction-schemes.pdf360 KB Last updated on 08/18/2017 PubMed DOI
January 2, 2025, Filed Under: 1999, PublicationsStretching single-domain proteins: phase diagram and kinetics of force-induced unfolding. Citation: Klimov, D. K. ; Thirumalai, D. Stretching single-domain proteins: phase diagram and kinetics of force-induced unfolding. Proc Natl Acad Sci U S A 96, 6166-70. Download Citation stretching-single-domain-proteins-phase-diagram-and-kinetics-of-force-induced-unfolding.pdf195 KB Last updated on 01/03/2018 PubMed
January 2, 2025, Filed Under: 1998, PublicationsCooperativity in protein folding: from lattice models with sidechains to real proteins. Citation: Klimov, D. K. ; Thirumalai, D. Cooperativity in protein folding: from lattice models with sidechains to real proteins. Fold Des 3 127-39. Download Citation PubMed
January 2, 2025, Filed Under: 1998, PublicationsHydration for a series of hydrocarbons. Citation: Mountain, R. D. ; Thirumalai, D. Hydration for a series of hydrocarbons. Proc Natl Acad Sci U S A 95, 8436-40. Download Citation hydration-for-a-series-of-hydrocarbons.pdf204 KB Last updated on 01/03/2018 PubMed
January 2, 2025, Filed Under: 1998, PublicationsLattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism. Citation: Klimov, D. K. ; Thirumalai, D. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism. J Mol Biol 282, 471-92. Download Citation PubMed DOI
January 2, 2025, Filed Under: 1998, PublicationsNative secondary structure formation in RNA may be a slave to tertiary folding. Citation: Thirumalai, D. Native secondary structure formation in RNA may be a slave to tertiary folding. Proc Natl Acad Sci U S A 95, 11506-8. Download CitationDownload native-secondary-structure-formation-in-rna-may-be-a-slave-to-tertiary-folding.pdf163 KB Last updated on 01/03/2018 PubMed
January 2, 2025, Filed Under: 1998, PublicationsVirtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics. Citation: Klimov, D. K. ; Betancourt, M. R. ; Thirumalai, D. Virtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics. Fold Des 3 481-96. Download Citation virtual-atom-representation-of-hydrogen-bonds-in-minimal-off-lattice-models-of-a-helices-effect-on-stability-cooperativity-and-kinetics.pdf1.71 MB Last updated on 08/18/2017 PubMed
January 2, 2025, Filed Under: 1998, PublicationsFishing for folding nuclei in lattice models and proteins. Citation: Thirumalai, D. ; Klimov, D. K. Fishing for folding nuclei in lattice models and proteins. Fold Des 3 R112-8; discussion R107. Download Citation PubMed DOI
January 2, 2025, Filed Under: 1997, PublicationsFolding of RNA involves parallel pathways. Citation: Pan, J. ; Thirumalai, D. ; Woodson, S. A. Folding of RNA involves parallel pathways. J Mol Biol 273, 7-13. Download Citation PubMed DOI
January 2, 2025, Filed Under: 1997, PublicationsKinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. Citation: Mohanty, D. ; Elber, R. ; Thirumalai, D. ; Beglov, D. ; Roux, B. Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. J Mol Biol 272, 423-42. Download Citation PubMed DOI
