Author: Brett Baker

We are busy sorting through loads of genomic data from the Gulf of Mexico hypoxic dead zone and surrounding water.  Here is the tetra nucleotide ESOM clustering map of the assembled genomes from that project.  55 genomes and counting!

Postdoctoral fellowship in marine microbial ecology

A postdoctoral fellowship in marine microbial ecology is available at the University of Texas, Marine Science Institute located in the seaside community of Port Aransas, TX. The Baker Lab is studying microbial biogeochemical cycling in a variety of marine and estuary habitats (namely sediments). The position will involve reconstruction of numerous (bacteria and archaea) genomes, and tracking gene activity in situ via transcriptomics, to understand how metabolic and ecological roles are partitioned in nature. Experience with metagenomic assembly of high-throughput (including transcriptomic) sequencing data, evidence of programming skills, and publication record are desirable. We are looking for a creative, independent scientist who can work and communicate effectively in an interdisciplinary, collaborative environment. A PhD and research experience in an appropriate discipline are required.  The initial appointment will be for a two-year period, with the possibility of a yearly extension to up to three years based upon performance. To apply, please submit a cover letter, CV, and contact information for three references via email to Brett Baker at acidophile@gmail.com.

Kiley has been busy extracting DNA from some really interesting sediments samples from the Guaymas Basin in the Gulf of California. We have submitted them for metagenomic sequencing, so we should be reconstructing some novel “hot-seep” bacteria and ANME archaea in the next few weeks!

We are in the process of setting up our lab here at Univ of Texas Austin Marine Science Institute! This is a view of the building we are located in from the dunes just off the beach here in Port Aransas, TX.