January 2, 2025, Filed Under: 2006, PublicationsDetermination of network of residues that regulate allostery in protein families using sequence analysis. Citation: Dima, R. I. ; Thirumalai, D. Determination of network of residues that regulate allostery in protein families using sequence analysis. Protein Sci 15, 258-68. Download determination-of-network-of-residues-that-regulate-allostery-in-protein-families-using-sequence-analysis.pdf511 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsDynamic transition in tRNA is solvent induced. Citation: Caliskan, G. ; Briber, R. M. ; Thirumalai, D. ; Garcia-Sakai, V. ; Woodson, S. A. ; Sokolov, A. P. Dynamic transition in tRNA is solvent induced. J Am Chem Soc 128, 32-3. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsEffect of finite size on cooperativity and rates of protein folding. Citation: Kouza, M. ; Li, M. S. ; O’Brien, E. P. ; Hu, C. – K. ; Thirumalai, D. Effect of finite size on cooperativity and rates of protein folding. J Phys Chem A 110, 671-6. Download effect-of-finite-size-on-cooperativity-and-rates-of-protein-folding.pdf204 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsForced-unfolding and force-quench refolding of RNA hairpins. Citation: Hyeon, C. ; Thirumalai, D. Forced-unfolding and force-quench refolding of RNA hairpins. Biophys J 90, 3410-27. Download forced-unfolding-and-force-quench-refolding-of-rna-hairpins.pdf555 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsMultiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions. Citation: Li, M. S. ; Hu, C. – K. ; Klimov, D. K. ; Thirumalai, D. Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions. Proc Natl Acad Sci U S A 103, 93-8. Download multiple-stepwise-refolding-of-immunoglobulin-domain-i27-upon-force-quench-depends-on-initial-conditions.pdf482 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsNanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces. Citation: Cheung, M. S. ; Thirumalai, D. Nanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces. J Mol Biol 357, 632-43. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsCounterion charge density determines the position and plasticity of RNA folding transition states. Citation: Koculi, E. ; Thirumalai, D. ; Woodson, S. A. Counterion charge density determines the position and plasticity of RNA folding transition states. J Mol Biol 359, 446-54. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsHydrophobic and ionic interactions in nanosized water droplets. Citation: Vaitheeswaran, S. ; Thirumalai, D. Hydrophobic and ionic interactions in nanosized water droplets. J Am Chem Soc 128, 13490-6. Download hydrophobic-and-ionic-interactions-in-nanosized-water-droplets.pdf301 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsKinetics of interior loop formation in semiflexible chains. Citation: Hyeon, C. ; Thirumalai, D. Kinetics of interior loop formation in semiflexible chains. J Chem Phys 124, 104905. Download kinetics-of-interior-loop-formation-in-semiflexible-chains.pdf590 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2006, PublicationsLow-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations. Citation: Zheng, W. ; Brooks, B. R. ; Thirumalai, D. Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations. Proc Natl Acad Sci U S A 103, 7664-9. Download low-frequency-normal-modes-that-describe-allosteric-transitions-in-biological-nanomachines-are-robust-to-sequence-variations.pdf2.41 MB Last updated on 01/03/2018 PubMed DOI
