January 3, 2025, Filed Under: 2008, PublicationsDissecting contact potentials for proteins: relative contributions of individual amino acids. Citation: Buchete, N. – V. ; Straub, J. E. ; Thirumalai, D. Dissecting contact potentials for proteins: relative contributions of individual amino acids. Proteins 70, 119-30. Download dissecting-contact-potentials-for-proteins-relative-contributions-of-individual-amino-acids.pdf707 KB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsEffects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. Citation: Pincus, D. L. ; Hyeon, C. ; Thirumalai, D. Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. J Am Chem Soc 130, 7364-72. Download effects-of-trimethylamine-n-oxide-tmao-and-crowding-agents-on-the-stability-of-rna-hairpins.pdf1.57 MB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsKinetic model for the coupling between allosteric transitions in GroEL and substrate protein folding and aggregation. Citation: Tehver, R. ; Thirumalai, D. Kinetic model for the coupling between allosteric transitions in GroEL and substrate protein folding and aggregation. J Mol Biol 377, 1279-95. Download kinetic-model-for-the-coupling-between-allosteric-transitions-in-groel-and-substrate-protein-folding-and-aggregation.pdf1.09 MB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsKinetics of loop formation in polymer chains. Citation: Toan, N. M. ; Morrison, G. ; Hyeon, C. ; Thirumalai, D. Kinetics of loop formation in polymer chains. J Phys Chem B 112, 6094-106. Download kinetics-of-loop-formation-in-polymer-chains.pdf525 KB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsMultiple probes are required to explore and control the rugged energy landscape of RNA hairpins. Citation: Hyeon, C. ; Thirumalai, D. Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. J Am Chem Soc 130, 1538-9. Download multiple-probes-are-required-to-explore-and-control-the-rugged-energy-landscape-of-rna-hairpins.pdf204 KB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsStructures and free-energy landscapes of the wild type and mutants of the Abeta(21-30) peptide are determined by an interplay between intrapeptide electrostatic and hydrophobic interactions. Citation: Tarus, B. ; Straub, J. E. ; Thirumalai, D. Structures and free-energy landscapes of the wild type and mutants of the Abeta(21-30) peptide are determined by an interplay between intrapeptide electrostatic and hydrophobic interactions. J Mol Biol 379, 815-29. Download structures-and-free-energy-landscapes-of-the-wild-type-and-mutants-of-the-ab21-30-peptide-are-determined-by-an-interplay-between-intrapeptide-electrostatic-and-hydrophobic-interactions.pdf1.57 MB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsCompression and stretching of a self-avoiding chain in cylindrical nanopores. Citation: Jun, S. ; Thirumalai, D. ; Ha, B. – Y. Compression and stretching of a self-avoiding chain in cylindrical nanopores. Phys Rev Lett 101, 138101. Download compression-and-stretching-of-a-self-avoiding-chain-in-cylindrical-nanopores.pdf371 KB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsEffects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model. Citation: O’Brien, E. P. ; Ziv, G. ; Haran, G. ; Brooks, B. R. ; Thirumalai, D. Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model. Proc Natl Acad Sci U S A 105, 13403-8. Download effects-of-denaturants-and-osmolytes-on-proteins-are-accurately-predicted-by-the-molecular-transfer-model.pdf939 KB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsFactors governing helix formation in peptides confined to carbon nanotubes. Citation: O’Brien, E. P. ; Stan, G. ; Thirumalai, D. ; Brooks, B. R. Factors governing helix formation in peptides confined to carbon nanotubes. Nano Lett 8 3702-8. Download factors-governing-helix-formation-in-peptides-confined-to-carbon-nanotubes.pdf2.03 MB Last updated on 08/18/2017 PubMed DOI
January 3, 2025, Filed Under: 2008, PublicationsForce-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes. Citation: Hyeon, C. ; Morrison, G. ; Thirumalai, D. Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes. Proc Natl Acad Sci U S A 105, 9604-9. Download force-dependent-hopping-rates-of-rna-hairpins-can-be-estimated-from-accurate-measurement-of-the-folding-landscapes.pdf754 KB Last updated on 08/18/2017 PubMed DOI
