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Publications

January 2, 2025, Filed Under: 2006, Publications

Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy: theory and applications.

Citation:

Barsegov, V. ; Klimov, D. K. ; Thirumalai, D. Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy: theory and applications. Biophys J 90, 3827-41.

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mapping-the-energy-landscape-of-biomolecules-using-single-molecule-force-correlation-spectroscopy-theory-and-applications.pdf479 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

Residues in substrate proteins that interact with GroEL in the capture process are buried in the native state.

Citation:

Stan, G. ; Brooks, B. R. ; Lorimer, G. H. ; Thirumalai, D. Residues in substrate proteins that interact with GroEL in the capture process are buried in the native state. Proc Natl Acad Sci U S A 103, 4433-8.

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residues-in-substrate-proteins-that-interact-with-groel-in-the-capture-process-are-buried-in-the-native-state.pdf2.46 MB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

The different electronic natures displayed by the alkylthio groups in simple and higher conjugated aniline systems.

Citation:

Han, C. – C. ; Balakumar, R. ; Thirumalai, D. ; Chung, M. – T. The different electronic natures displayed by the alkylthio groups in simple and higher conjugated aniline systems. Org Biomol Chem 4 3511-6.

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January 2, 2025, Filed Under: 2006, Publications

Dynamic competition between catch and slip bonds in selectins bound to ligands.

Citation:

Barsegov, V. ; Thirumalai, D. Dynamic competition between catch and slip bonds in selectins bound to ligands. J Phys Chem B 110, 26403-12.

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dynamic-competition-between-catch-and-slip-bonds-in-selectins-bound-to-ligands.pdf362 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

Dynamics of allosteric transitions in GroEL.

Citation:

Hyeon, C. ; Lorimer, G. H. ; Thirumalai, D. Dynamics of allosteric transitions in GroEL. Proc Natl Acad Sci U S A 103, 18939-44.

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dynamics-of-allosteric-transitions-in-groel.pdf3.45 MB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers.

Citation:

Tarus, B. ; Straub, J. E. ; Thirumalai, D. Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers. J Am Chem Soc 128, 16159-68.

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dynamics-of-asp23-lys28-salt-bridge-formation-in-abeta10-35-monomers.pdf497 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins.

Citation:

Hyeon, C. ; Dima, R. I. ; Thirumalai, D. Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins. Structure 14, 1633-45.

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pathways-and-kinetic-barriers-in-mechanical-unfolding-and-refolding-of-rna-and-proteins.pdf2.05 MB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2006, Publications

Size, shape, and flexibility of RNA structures.

Citation:

Hyeon, C. ; Dima, R. I. ; Thirumalai, D. Size, shape, and flexibility of RNA structures. J Chem Phys 125, 194905.

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size-shape-and-flexibility-of-rna-structures.pdf373 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2005, Publications

Identifying natural substrates for chaperonins using a sequence-based approach.

Citation:

Stan, G. ; Brooks, B. R. ; Lorimer, G. H. ; Thirumalai, D. Identifying natural substrates for chaperonins using a sequence-based approach. Protein Sci 14, 193-201.

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identifying-natural-substrates-for-chaperonins-using-a-sequence-based-approach.pdf194 KB

Last updated on 01/03/2018

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January 2, 2025, Filed Under: 2005, Publications

Probing the initial stage of aggregation of the Abeta(10-35)-protein: assessing the propensity for peptide dimerization.

Citation:

Tarus, B. ; Straub, J. E. ; Thirumalai, D. Probing the initial stage of aggregation of the Abeta(10-35)-protein: assessing the propensity for peptide dimerization. J Mol Biol 345, 1141-56.

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probing-the-initial-stage-of-aggregation-of-the-abeta10-35-protein-assessing-the-propensity-for-peptide-dimerization.pdf2.03 MB

Last updated on 01/03/2018

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