January 2, 2025, Filed Under: 2005, PublicationsHOPE: a homotopy optimization method for protein structure prediction. Citation: Dunlavy, D. M. ; O’Leary, D. P. ; Klimov, D. ; Thirumalai, D. HOPE: a homotopy optimization method for protein structure prediction. J Comput Biol 12, 1275-88. Download hope-a-homotopy-optimization-method-for-protein-structure-prediction.pdf129 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsProbing protein-protein interactions by dynamic force correlation spectroscopy. Citation: Barsegov, V. ; Thirumalai, D. Probing protein-protein interactions by dynamic force correlation spectroscopy. Phys Rev Lett 95, 168302. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsRibosome exit tunnel can entropically stabilize alpha-helices. Citation: Ziv, G. ; Haran, G. ; Thirumalai, D. Ribosome exit tunnel can entropically stabilize alpha-helices. Proc Natl Acad Sci U S A 102, 18956-61. Download ribosome-exit-tunnel-can-entropically-stabilize-alpha-helices.pdf360 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsSymmetric connectivity of secondary structure elements enhances the diversity of folding pathways. Citation: Klimov, D. K. ; Thirumalai, D. Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways. J Mol Biol 353, 1171-86. Download Citation PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsInfluence of surface interactions on folding and forced unbinding of semiflexible chains. Citation: Barsegov, V. ; Thirumalai, D. Influence of surface interactions on folding and forced unbinding of semiflexible chains. J Phys Chem B 109, 21979-88. Download influence_of_surface_interactions_on_folding_and_forced_unbinding_of_semiflexible_chains.pdf613 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2005, PublicationsPersistence length changes dramatically as RNA folds. Citation: Caliskan, G. ; Hyeon, C. ; Perez-Salas, U. ; Briber, R. M. ; Woodson, S. A. ; Thirumalai, D. Persistence length changes dramatically as RNA folds. Phys Rev Lett 95, 268303. Download persistence-length-changes-dramatically-as-rna-folds.pdf221 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2004, PublicationsCompaction of a bacterial group I ribozyme coincides with the assembly of core helices. Citation: Perez-Salas, U. A. ; Rangan, P. ; Krueger, S. ; Briber, R. M. ; Thirumalai, D. ; Woodson, S. A. Compaction of a bacterial group I ribozyme coincides with the assembly of core helices. Biochemistry 43, 1746-53. Download compaction-of-a-bacterial-group-i-ribozyme-coincides-with-the-assembly-of-core-helices.pdf141 KB Last updated on 08/18/2017 PubMed DOI
January 2, 2025, Filed Under: 2004, PublicationsOrientational potentials extracted from protein structures improve native fold recognition. Citation: Buchete, N. – V. ; Straub, J. E. ; Thirumalai, D. Orientational potentials extracted from protein structures improve native fold recognition. Protein Sci 13, 862-74. Download orientational-potentials-extracted-from-protein-structures-improve-native-fold-recognition.pdf360 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2004, PublicationsAqueous urea solution destabilizes Abeta(16-22) oligomers. Citation: Klimov, D. K. ; Straub, J. E. ; Thirumalai, D. Aqueous urea solution destabilizes Abeta(16-22) oligomers. Proc Natl Acad Sci U S A 101, 14760-5. Download aqueous-urea-solution-destabilizes-abeta16-22-oligomers.pdf446 KB Last updated on 01/03/2018 PubMed DOI
January 2, 2025, Filed Under: 2004, PublicationsContinuous anisotropic representation of coarse-grained potentials for proteins by spherical harmonics synthesis. Citation: Buchete, N. – V. ; Straub, J. E. ; Thirumalai, D. Continuous anisotropic representation of coarse-grained potentials for proteins by spherical harmonics synthesis. J Mol Graph Model 22, 441-50. Download continuous-anisotropic-representation-of-coarse-grained-potentials-for-proteins-by-spherical-harmonics-synthesis.pdf581 KB Last updated on 01/03/2018 PubMed DOI
