Nanobio – Sequencing, Sensing and Biological Channels:
- M. T. Gole, M. T. Dronadula, N. R. Aluru, C. J. Murphy, “Immunoglobulin adsorption and film formation on mechanically wrinkled and crumpled surfaces at submonolayer coverage”, Nanoscale Advances, Vol. 5, No. 7, pp. 2085-2095, 2023. DOI: 10.1039/d3na00033h (link)
- A. Ganguli, J. Lim, A. Mostafa, C. Saavedra, A. Rayabharam, N. R. Aluru, M. Wester, K. C. White, J. Kumar, R. McGuffin, A. Frederick, E. Valera, R. Bashir, “A culture-free biphasic approach for sensitive and rapid detection of pathogens in dried whole-blood matrix”, Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, No. 40, Art No. e2209607119, 2022. DOI: 10.1073/pnas.2209607119 (link)
- M. T. Hwang, I. Park, M. Heiranian, A. Taqieddin, S. You, V. Faramarzi, A. A. Pak, A. M. van der Zande, N. R. Aluru, R. Bashir, “Ultrasensitive Detection of Dopamine, IL-6, and SARS-CoV-2 Proteins on Crumpled Graphene FET Biosensor”, Advanced Materials Technologies, Vol. 6, No. 11, Art. No. 2100712, 2021. DOI: 10.1002/admt.202100712 (link)
- A. Mostafa, A. Ganguli, J. Berger, A. Rayabharam, C. Saavedra, N. R. Aluru, R. Bashir, “Culture-free biphasic approach for sensitive detection of Escherichia coli O157:H7 beef samples”, Biotechnology and Bioengineering, Vol. 118, No. 11, pp. 4516-4529, 2021. DOI: 10.1002/bit.27920 (link)
- M. T. Hwang, M. Heiranian, Y. Kim, S. You, J. Leem, A. Taqieddin, V. Faramarzi, Y. Jing, I. Park, A. M. van der Zande, S. Nam, N. R. Aluru, R. Bashir, “Ultrasensitive detection of nucleic acids using deformed graphene channel field effect biosensors”, Nature Communications, Vol. 11, Art. No. 1543, 2020. DOI: 10.1038/s41467-020-15330-9
- A. Barati Farimani, M. Heiranian and N. R. Aluru, “Identification of amino acids with sensitive nanoporous MoS2: towards machine learning-based prediction”, npj 2D Materials and Applications, Vol. 2, Art. No. 14, 2018. DOI: 10.1038/s41699-018-0060-8
- A. Barati Farimani, M. Heiranian, K. Min and N. R. Aluru, “Antibody subclass detection using graphene nanopores”, Journal of Physical Chemistry Letters, Vol. 8, No. 7, pp. 1670-1676, 2017.
- A. Barati Farimani, P. Dibaeinia and N. R. Aluru, “DNA origami-graphene hybrid nanopore for DNA detection”, ACS Applied Materials & Interfaces, Vol. 9, No. 1, pp. 92-100, 2017.
- H. Fang, J. Zhao, K. J. Yu, E. Song, A. Barati Farimani, C.-H. Chiang, X. Jin, Y. Xue, D. Xu, W. Du, K. J. Seo, Y. Zhong, Z. Yang, S. M. Won, G. Fang, S. W. Choi, S. Chaudhuri, Y. Huang, M. A. Alam, J. Viventi, N. R. Aluru, and J. A. Rogers, “Ultrathin, transferred layers of thermally grown silicon dioxide as biofluid barriers for biointegrated flexible electronic systems”, Proceedings of the National Academy of Sciences of the United States of America, Vol. 113, No. 42, pp. 11682-11687, 2016.
- A. Barati Farimani, M. Heiranian and N. R. Aluru, “Electromechanical signatures for DNA sequencing through a mechanosensitive nanopore”, Journal of Physical Chemistry Letters, Vol. 6, No. 4, pp. 650-657, 2015.
- A. Barati Farimani, K. Min and N. R. Aluru, “DNA base detection using a single-layer MoS2”, ACS Nano, Vol. 8, No. 8, pp. 7914-7922, 2014.
- A. Barati Farimani, N. R. Aluru and E. Tajkhorshid, “Thermodynamic insight into spontaneous hydration and rapid water permeation in aquaporins”, Applied Physics Letters, Vol. 105, No. 8, Art. No. 083702, 2014.
- S. Banerjee, J. Shim, J. Rivera, X. Jin, D. Estrada, V. Solovyeva, X. You, J. Pak, E. Pop, N. R. Aluru and R. Bashir, “Electrochemistry at the edge of a single graphene layer in a nanopore”, ACS Nano, Vol. 7, No. 1, pp. 834-843, 2013.
- B. M. Venkatesan, D. Estrada, S. Banerjee, X. Jin, V. E. Dorgan, M. Bae, N. R. Aluru, E. Pop, R. Bashir, “Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes”, ACS Nano, Vol. 6, No. 1, pp. 441-450, 2012.
- Z. Chen, Y. Jiang, D. Dunphy, D. Adams, C. Hodges, N. Liu, N. Zhang, G. Xomeritakis, X. Jin, N. R. Aluru, S. Gaik, H. Hillhouse, C. J. Brinker, “DNA translocation through an array of kinked nanopores”, Nature Materials, Vol. 9, No. 8, pp. 667-675, 2010.
- J. Park and N. R. Aluru, “Water film thickness-dependent conformation and diffusion of single-strand DNA on poly(ethylene glycol)-silane surface”, Applied Physics Letters, Vol. 96, No. 12, Art. No. 123703, 2010.
- Y. Xu, X. Mi and N. R. Aluru, “Detection of defective DNA in carbon nanotubes by combined molecular dynamics/tight-binding technique”, Applied Physics Letters, Vol. 95, No. 11, Art. No. 113116, 2009.
- T.A. Van Der Straaten, J. M. Tang, U. Ravaioli, R. S. Eisenberg and N. R. Aluru, “Simulating ion permeation through the ompF porin ion channel using three-dimensional drift-diffusion theory”, Journal of Computational Electronics, Vol. 2, No. 1, pp. 29-47, 2003.
- T. A. van der Straaten, J. Tang, R. S. Eisenberg, U. Ravaioli and N. R. Aluru, “Three-dimensional continuum simulations of ion transport through biological ion channels: Effect of charge distribution in the constriction region of porin”, Journal of Computational Electronics, Vol. 1, No. 3, pp. 335-340, October 2002.
- K. Hess, U. Ravaioli, M. Gupta, N. R. Aluru, T. van der Straaten and R. S. Eisenberg, “Simulation of biological ionic channels by technology computer-aided design”, VLSI Design, Vol. 13, No. 1-4, pp. 179-187, 2001.